View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_3 (Length: 620)
Name: NF20304_low_3
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 11 - 602
Target Start/End: Complemental strand, 526116 - 525520
Alignment:
| Q |
11 |
tccaagaatatgtggtgttaaagagagatagatagagtgaggcataaatgaatgccacgtggtagatagggttgcatggagttgaaatagcagctcgttg |
110 |
Q |
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| T |
526116 |
tccaagaatgtgtggtgttaaagagagatagatagagtgaggcataaatgaatgccacgtggtagatagggttgcatggagttgaaatagcagctcgttg |
526017 |
T |
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| Q |
111 |
taaccacactttttccacaagctcctttattattcattcattcccctatctatcttatttatcaacaacacagagcagtgttaatttgccttagaaaccn |
210 |
Q |
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| T |
526016 |
taaccacactttttacacaagctcctttattattcattcattcccctatctatcttatttatcaacaacacagagcagtgttaatttgccttagaaacca |
525917 |
T |
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| Q |
211 |
nnnnnn-----gtagtagaagaagaaataatagtaatggcaactacacctgctttgtatggaactgcagtgagcacctccttccttaggaggcagccaat |
305 |
Q |
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| T |
525916 |
aaaaagtagaagaagaagaagaagaaataatagtaatggcaaccacacctgctttgtatggaactgcagtgagcacctccttccttaggaggcagccaat |
525817 |
T |
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| Q |
306 |
gccagtgtcaatcagcaccaccacaaaggcttttcccagcggttttggtttaaaaagtaaaacaggaaagcgtggtgatcttgcagttgcaatggctact |
405 |
Q |
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| T |
525816 |
gccagtgtcaatcagcaccaccacaaaggcttttcccagcggttttggtttaaaaagtaaaacaggaaagcgtggtgatcttgcagttgcaatggctact |
525717 |
T |
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| Q |
406 |
tacaaggtgaagcttgttacaccagaaggaactcaagaatttgattgtccaagtgatgtttacattcttgaccatgctgaggaagttggtattgaccttc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
525716 |
tacaaggtgaagcttgttacaccagaaggaactcaagaatttgattgtccaagtgatgtttacattcttgaccatgctgaggaagttggtattgaccttc |
525617 |
T |
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| Q |
506 |
catactcatgcagagctggttcttgttcttcatgtgctggcaaagttgctgctggtgcagttgatcagtcagatggttctttccttgatgatgatca |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
525616 |
catactcatgcagagctggttcttgttcttcatgtgctggcaaagttgctgctggtgcagttgatcagtcagatggttctttccttgatgatgatca |
525520 |
T |
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