View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_low_31 (Length: 216)

Name: NF20304_low_31
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_low_31
NF20304_low_31
[»] chr1 (2 HSPs)
chr1 (14-200)||(7521572-7521756)
chr1 (20-67)||(32573686-32573733)
[»] scaffold0022 (2 HSPs)
scaffold0022 (20-63)||(43565-43608)
scaffold0022 (20-63)||(77285-77328)
[»] scaffold0039 (1 HSPs)
scaffold0039 (21-67)||(57617-57663)
[»] scaffold0011 (1 HSPs)
scaffold0011 (20-66)||(8633-8678)
[»] chr7 (2 HSPs)
chr7 (26-68)||(260960-261002)
chr7 (22-67)||(19848421-19848466)
[»] chr8 (2 HSPs)
chr8 (21-68)||(34924123-34924170)
chr8 (21-67)||(14111716-14111762)
[»] chr5 (2 HSPs)
chr5 (21-63)||(30085584-30085626)
chr5 (25-62)||(16596825-16596862)
[»] chr4 (3 HSPs)
chr4 (21-62)||(41223046-41223087)
chr4 (30-62)||(55777856-55777888)
chr4 (30-62)||(55842036-55842068)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 7521756 - 7521572
Alignment:
Q  14 gtcgagagaacggaatgagttataacttatttatttcaattttacccttttatttnnnnnnnncatcaataggtggaacaaacagtaataacaattnnnn 113  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||        
T  7521756 gtcgagagaattgaatgagttataacttatttatttcaattttacccttttatttaaaaaaa-catcaataggtggaacaaacagtaataacaattaaaa 7521658  T
Q  114 nnnnntctttaggtgggctaatttatacaaatccaagcataaaatcaatgcatgaactcataaatgaaacatagataccactttatg 200  Q
         |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7521657 aaaa-tctttaggtgggctaatttatacagatccaagcataaaatcaatgcatgaactcataaatgaaacatggataccactttatg 7521572  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 32573733 - 32573686
Alignment:
Q  20 agaacggaatgagttataacttatttatttcaattttacccttttatt 67  Q
    ||||||||| |||||||||||| |||||| ||||||||||||| ||||    
T  32573733 agaacggaacgagttataacttttttattccaattttacccttatatt 32573686  T

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Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 43565 - 43608
Alignment:
Q  20 agaacggaatgagttataacttatttatttcaattttacccttt 63  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  43565 agaacggaatgagttataacttttttatttcaattttacccttt 43608  T

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Target: scaffold0022; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 77285 - 77328
Alignment:
Q  20 agaacggaatgagttataacttatttatttcaattttacccttt 63  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  77285 agaacggaatgagttataacttttttatttcaattttacccttt 77328  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 57663 - 57617
Alignment:
Q  21 gaacggaatgagttataacttatttatttcaattttacccttttatt 67  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||    
T  57663 gaacggaacgagttataacttttttatttcaattttacccttatatt 57617  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 8633 - 8678
Alignment:
Q  20 agaacggaatgagttataacttatttatttcaattttacccttttat 66  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8633 agaacagaatgagttataactt-tttatttcaattttacccttttat 8678  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 260960 - 261002
Alignment:
Q  26 gaatgagttataacttatttatttcaattttacccttttattt 68  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  260960 gaatgagttataacttttttaattcaattttacccttttattt 261002  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 19848466 - 19848421
Alignment:
Q  22 aacggaatgagttataacttatttatttcaattttacccttttatt 67  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  19848466 aacggaacgagttataacttttttatttcaattttacccttatatt 19848421  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 34924123 - 34924170
Alignment:
Q  21 gaacggaatgagttataacttatttatttcaattttacccttttattt 68  Q
    |||||||| |||||||||||| |||||| ||||||||||||| |||||    
T  34924123 gaacggaacgagttataacttttttattccaattttacccttatattt 34924170  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 14111716 - 14111762
Alignment:
Q  21 gaacggaatgagttataacttatttatttcaattttacccttttatt 67  Q
    |||||||| |||||||||||| |||||| ||||||||||||| ||||    
T  14111716 gaacggaacgagttataacttttttattccaattttacccttatatt 14111762  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 30085626 - 30085584
Alignment:
Q  21 gaacggaatgagttataacttatttatttcaattttacccttt 63  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||    
T  30085626 gaacggaatgatttataacttttttatttcatttttacccttt 30085584  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 16596825 - 16596862
Alignment:
Q  25 ggaatgagttataacttatttatttcaattttaccctt 62  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  16596825 ggaatgagttataacttttttattccaattttaccctt 16596862  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 41223046 - 41223087
Alignment:
Q  21 gaacggaatgagttataacttatttatttcaattttaccctt 62  Q
    |||||||| |||||||||||| |||||| |||||||||||||    
T  41223046 gaacggaacgagttataacttttttattccaattttaccctt 41223087  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 55777888 - 55777856
Alignment:
Q  30 gagttataacttatttatttcaattttaccctt 62  Q
    |||||||||||||||||||||| ||||||||||    
T  55777888 gagttataacttatttatttcatttttaccctt 55777856  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 55842068 - 55842036
Alignment:
Q  30 gagttataacttatttatttcaattttaccctt 62  Q
    |||||||||||||||||||||| ||||||||||    
T  55842068 gagttataacttatttatttcatttttaccctt 55842036  T

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