View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_4 (Length: 539)
Name: NF20304_low_4
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 173 - 530
Target Start/End: Original strand, 8694852 - 8695209
Alignment:
| Q |
173 |
ataatctgaggacttctagctagccgcaattcatattaagaagcttaaaagaaaataaaatattgtagtagaaagactagattctctttttaatttagtg |
272 |
Q |
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| T |
8694852 |
ataatctgaggacttctagctagccacaattcatattaagaagcttaaaagaaaataaaatattgtagtagaaagactagcttctctttttaatttagtg |
8694951 |
T |
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| Q |
273 |
attgataggaggcttttaggtttttataggtggtaaaagcttatgtannnnnnncaaagattagtcaaattttcaaacgcatctttgttggataaacatg |
372 |
Q |
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| T |
8694952 |
attgataggaggcttttaggtttttataggtggtaaaagcttatgtatttttttcgaagattagtcaaattttcaaacgcatctttgttggatatacatg |
8695051 |
T |
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| Q |
373 |
ggagggtagaggtgaagttctctgaaaatttagagattcttttgttttaacgttaagaaagatagaaatagagagtgatgtaataagcgcgataagtaga |
472 |
Q |
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| T |
8695052 |
ggaggatagaggtgaaattctgtgaaaatttagagattctttcgttttaacgttaagaaagatagaaatagagagtgatgtaataagcgcgataagtaga |
8695151 |
T |
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| Q |
473 |
tgatgtgatagagatagatgatgtaaaaagtaatagtcttatttttaagtagtataat |
530 |
Q |
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| T |
8695152 |
tgatgtgatagaaatagatgatgtaaaaagtaatagtcttatttttaagtagtataat |
8695209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 8693475 - 8693638
Alignment:
| Q |
17 |
atatgatacatgttttttctttgggtggttttacatcgttatttatctaatattgatgtatttgaatgtatgatttacttaactataatttaatttaata |
116 |
Q |
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| T |
8693475 |
atatgatacatgttttttctttgggtggttttacatcgttatttatctaatattgatgtatttgaatgtatgatttacttaactataatttaatttaata |
8693574 |
T |
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| Q |
117 |
atacttatgctagtttaattttgttatgagtactttcattccttggtaatggttatataatctg |
180 |
Q |
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| T |
8693575 |
atacttatgctagtttaattttgttatgagtactttcattccttggtaatggttatataatctg |
8693638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 8687219 - 8687038
Alignment:
| Q |
24 |
acatgttttttctttgggtggttttacatcgttatttatcta----atattgatgtatttgaatgtatgatttacttaactataatttaatttaat---a |
116 |
Q |
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| T |
8687219 |
acatgttttttctttgggtggttttacatagttatttagctagggtatattgatgtgtatgaatatatgattaacttcattattatttatgttaataaaa |
8687120 |
T |
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| Q |
117 |
atacttatgctagtttaattttgtta-tgagtactttcattccttggtaatggttatataatctgaggacttctagctagcc |
197 |
Q |
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| T |
8687119 |
atacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctgaggacttctagctagcc |
8687038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 8675252 - 8675352
Alignment:
| Q |
22 |
atacatgttttttctttgggtggttttacatcgttatttatc-----taatattgatgtatttgaatgtatgatttacttaactataatttaatttaata |
116 |
Q |
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| T |
8675252 |
atacatgttttttcttcgggtggttttacatagttctttatctagtttaatattgatgtatatgaatgtatgattaacttcattattatttatgttaata |
8675351 |
T |
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| Q |
117 |
a |
117 |
Q |
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| T |
8675352 |
a |
8675352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 8695798 - 8695752
Alignment:
| Q |
17 |
atatgatacatg-ttttttctttgggtggttttacatcgttatttat |
62 |
Q |
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| T |
8695798 |
atatgatacatggttttttctttgggtggttttgcaacgttatttat |
8695752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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