View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_5 (Length: 532)
Name: NF20304_low_5
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 267499 - 266982
Alignment:
| Q |
1 |
gagcgtagcgtgagtgtaggttggactttgaacttgacattgtgtttgcttcactgtgattgacatgatatgatatgatagagagataattatagcacac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267499 |
gagcgtagcgtgagtgtaggttggactttgaacttgacattgtgtttgcttcattgtgattgacatgatatgatatgatagagagataattatagcacac |
267400 |
T |
|
| Q |
101 |
cacgaagtgaacaacctggcttggacaaattgcgcttttcgtttttggtaaagcaagattaatttgaaccgaaaacaagataaacaacctgttagaaact |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267399 |
caagaagtgaacaacctggcttggacaaattgcgcttttcgtttttggtaaagcaagattaatttgaaccgaaaacaagataaacaacctgttagaaact |
267300 |
T |
|
| Q |
201 |
ttaaattaagttaaaagaccgttgatggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267299 |
ttaaattaagttaaaagaccgttgatggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggc |
267200 |
T |
|
| Q |
301 |
cagaaactagagcagtgtatgtgacattatccggttgtagtcctccgtcaataatttcgttgaagagtctgattgcatcgtggaagttatcaacttttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
267199 |
cagaaactagagcagtgtatgtgacattatccggttgtagtcctccgtcaataatttcattgaagagtctgattgcatcgtggaagttatcaacttttaa |
267100 |
T |
|
| Q |
401 |
tctcccatcgattagaactctgtaggtaataacatcaggtttgatccctctcctcttcatatcctgcaggaggtcacgagtcacataaagtttgtggcaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
267099 |
tctcccatcgattagaactctgtaggtaataacatcaggtttgatccctctcctcttcatatcctgcaggaggccacgagtcacataaagtttgtggcaa |
267000 |
T |
|
| Q |
501 |
tgagtcacgattcaaact |
518 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
266999 |
tgagtcacgattcaaact |
266982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 361
Target Start/End: Complemental strand, 13587361 - 13587227
Alignment:
| Q |
226 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
325 |
Q |
| |
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|||| ||||| | |||||||| |||||||| ||||| ||| | | ||||| | ||||||| | |||||||| ||||| |||||||||||||||||| || |
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| T |
13587361 |
tggtatcatttcattggaagatatttcattatacaa-tattattgatttctccgtgtgcccactgtttaacaagccaggaactagagcagtgtatgttac |
13587263 |
T |
|
| Q |
326 |
attatccggttgtagtcctccgtcaataatttcgtt |
361 |
Q |
| |
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|||| | |||| |||||||| ||||||||||||||| |
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|
| T |
13587262 |
attacctggttctagtcctcggtcaataatttcgtt |
13587227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 480
Target Start/End: Original strand, 6783549 - 6783634
Alignment:
| Q |
395 |
ttttaatctcccatcgattagaactctgtaggtaataacatcaggtttgatccctctcctcttcatatcctgcaggaggtcacgag |
480 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||| || | ||||||||||||||||||||| |||||||| | ||||||||||| |
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|
| T |
6783549 |
ttttaatctcccatggagtagaactgtgtaggtaactactttaggtttgatccctctcctctttatatcctggaagaggtcacgag |
6783634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 476
Target Start/End: Original strand, 3109090 - 3109153
Alignment:
| Q |
413 |
tagaactctgtaggtaataacatcaggtttgatccctctcctcttcatatcctgcaggaggtca |
476 |
Q |
| |
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||||||| ||||||||| |||| ||||| ||||||||||||||||||||| || | ||||||| |
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|
| T |
3109090 |
tagaactgtgtaggtaactacattaggttggatccctctcctcttcatatcttggaagaggtca |
3109153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 6783236 - 6783362
Alignment:
| Q |
231 |
tcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgacattat |
330 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||| ||| ||| | | |||| ||||||||||| ||| ||| ||||||||||||||| || ||| |
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| T |
6783236 |
tcattcccttggaagacatttcatcatagta-tataattgctatctccttttgccttccgtttaacaagccccaaattagagcagtgtatgttactctat |
6783334 |
T |
|
| Q |
331 |
ccggttgtagtcctccgtcaataatttc |
358 |
Q |
| |
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| |||| ||||||| |||||||||||| |
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|
| T |
6783335 |
ctggttttagtccttggtcaataatttc |
6783362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 476
Target Start/End: Complemental strand, 51282131 - 51282050
Alignment:
| Q |
395 |
ttttaatctcccatcgattagaactctgtaggtaataacatcaggtttgatccctctcctcttcatatcctgcaggaggtca |
476 |
Q |
| |
|
||||||| ||||||| | ||||||| |||||||||| ||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
51282131 |
ttttaatttcccatcaagtagaactgtgtaggtaatttcatcaggtttgatccctctactcttcatatcctggaagaggtca |
51282050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 51283868 - 51283720
Alignment:
| Q |
226 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
325 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||| | |||| || ||| |||||| | |||||||| ||| |||| || |||||||||||| || |
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| T |
51283868 |
tggtgtcattcccttggaagacatttcattatacaa-tgtaacttctatctctgggtgcccactgtttaacaagcccgaaaataaagcagtgtatgttac |
51283770 |
T |
|
| Q |
326 |
attatccggttgtagtcctccgtcaataatttcgttgaagagtctgattgc |
376 |
Q |
| |
|
|||||| |||| |||||||| || ||||| || ||||||||||| ||||| |
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| T |
51283769 |
attatctggttctagtcctctgttaataactt-attgaagagtctaattgc |
51283720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 379
Target Start/End: Complemental strand, 41628112 - 41627960
Alignment:
| Q |
226 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
325 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| | |||| ||| ||| || ||| | |||||||| ||| |||| || |||||||||||| || |
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| T |
41628112 |
tggtgtcattcccttggaagacatttcattatacaa-tgtaactgctatctctgagttcccactgtttaacaagcccgaaaataaagcagtgtatgttac |
41628014 |
T |
|
| Q |
326 |
attatccggttgtagtcctccgtcaataatttcgttgaagagtctgattgcatc |
379 |
Q |
| |
|
|||||| |||| |||||||| | |||| ||| ||||||||||| |||||||| |
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|
| T |
41628013 |
attatctggttctagtcctcttttcataacttcattgaagagtctaattgcatc |
41627960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 41627786 - 41627723
Alignment:
| Q |
403 |
tcccatcgattagaactctgtaggtaataacatcaggtttgatccctctcctcttcatatcctg |
466 |
Q |
| |
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||||||| | ||||||| |||||||||| |||||||||||||| ||||| |||||||||||||| |
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|
| T |
41627786 |
tcccatcaagtagaactgtgtaggtaattacatcaggtttgattcctctgctcttcatatcctg |
41627723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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