View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20304_low_6 (Length: 487)
Name: NF20304_low_6
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 122 - 487
Target Start/End: Complemental strand, 38579034 - 38578665
Alignment:
| Q |
122 |
cttaatgtgcaaaatgtgtttggtaagcagtaacatccaaatcttttcaaatttcaaacttgtttatatcatcaactaatgtaatgactattattgattt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38579034 |
cttaatgtgcaaaatgtgtttggtaagcagtaacatccaaatcttttcaaatttcaaacttgtttatatcatcaaccaatgtaatgactattattgattt |
38578935 |
T |
|
| Q |
222 |
caatccaaaacaggatgataagttggcttaagcatacatacagtacaaaaagttgcataataaacctgattcaatgtccactctaccctattataaaaat |
321 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38578934 |
caatccaaaacaggatgataaattggcttaagcatacatacagtacaagaagttgcataataaacctgattcaatgtccactctaccctattataaaaat |
38578835 |
T |
|
| Q |
322 |
gtacgagacg----aatgaaatgacaattgacaactgtaaatgtaattgcaaatagttctaaattatggtctgcaaatgtaattgcaactgtaatataac |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38578834 |
gtacgagacgatataatgaaatgacaattgacaactgtaaatgtaattgcaaatagttctaaattattgtctgcaaatgtaattgcaactgtaatataac |
38578735 |
T |
|
| Q |
418 |
tgttttagggcctatttgaatcaacatatttgagcttatacactgacatgaacacatgtgatactgtttg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38578734 |
tgttttagggcctatttgaatcaacatatttgagtttatatactgacatgaacacatgtgatactgtttg |
38578665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 38579201 - 38579086
Alignment:
| Q |
10 |
ataatactattggtaacaccatgtaagtcccttcnnnnnnnn-gcaacaaaataatagtaatttattcttataaactctctcattcatgtgctgttattt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38579201 |
ataatactattggtaacaccatgtaagtcccttctttttttttgcaacaaaataatagtaatttattcttataaactctctcattcatgtgctgttattt |
38579102 |
T |
|
| Q |
109 |
attctttaatgctctt |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38579101 |
attctttaatgctctt |
38579086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University