View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_7 (Length: 407)
Name: NF20304_low_7
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 43653072 - 43653234
Alignment:
| Q |
17 |
attatcaaggagaagttcgatacatttcaaagagaacaacactaggaaaataaaatgttgtcaattttcaccatttccagaaaacattagaaccacactt |
116 |
Q |
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| T |
43653072 |
attatcaaggagaagttcgatacatttcaaagagaacaacactaggaaaataaaatgttgtcaattttcaccatttccagaaaacattagaaccacactt |
43653171 |
T |
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| Q |
117 |
gtatttgtcctttccttcacattcaagttccaaatcttctgtaatgaatggtactttctgcgt |
179 |
Q |
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| T |
43653172 |
gtatttgtcctttccttcacattcaagttccaaatcttctgtaatgaatggtactttctgcgt |
43653234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 247 - 396
Target Start/End: Original strand, 43653302 - 43653451
Alignment:
| Q |
247 |
tagtgaaacaaaagatgtttaaggttagagtcagaccttctgtttagcaagatcttggcaaccagtgaaattctcagggaacttgcaagtaccaaattgc |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43653302 |
tagtgaaacaaaagatgtttaaggttagagtcagaccttctgtttagcaagatcttggcaaccggtgaaattctcagggaacttgcaagtaccaaattgc |
43653401 |
T |
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| Q |
347 |
actgtatatgctcttgcaaaatttgctccactagtggctaacctcttctt |
396 |
Q |
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| T |
43653402 |
actgtatatgctcttgcaaaatttgctccactagtggctaacctcttctt |
43653451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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