View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_8 (Length: 389)
Name: NF20304_low_8
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 2220434 - 2220792
Alignment:
| Q |
18 |
aaaggtgatgataggaaagtaacttttaagaaagaaaaagaaaa-tatgatacgaaagtaatcttcactannnnnnnaatagttaaaagatgcaatataa |
116 |
Q |
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| T |
2220434 |
aaaggtgatgataggaaagtaacttttaagaaagaaaaagaaaaatatgatacgaaagtaatcttcactatttttttaatagttaaaagatgcaatgtaa |
2220533 |
T |
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| Q |
117 |
taattatattgctaagaccacctaataccattggttgatgatacaaagttatgactttgttagacacatatgaagtggnnnnnnnnntgtagtagaaagg |
216 |
Q |
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| T |
2220534 |
taattatattgctaagaccaactaataccattggttgat---acaaagttatgactttgttagacacatttgaagtggaaaaaaaaatgtagtagaaagg |
2220630 |
T |
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| Q |
217 |
agtacaagtggagcaaatatttacataattctaggacatgaatcatctcaagatcaaataatggtggcacaatcataaataatgatcttctcatggagga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2220631 |
agtacaagtggagcaaatatttacataattctaggacatgaatcatctcaagatcaaataatggtggcacaatcataaataatgatcttctcatggagga |
2220730 |
T |
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| Q |
317 |
atcaaaaccgttcatgcaacaagtttccttccatgttactagtttggtcgtaatattcttcg |
378 |
Q |
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| T |
2220731 |
atcaaaaccattcatacaacaagtttccttccatgttactagtttggtcgtaatatttttcg |
2220792 |
T |
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