View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20305_high_3 (Length: 335)
Name: NF20305_high_3
Description: NF20305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20305_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 11816186 - 11815875
Alignment:
| Q |
6 |
caaagggaataaaagaggtaacatacatattttcaggctatataataccaaaaggatggaaagtgttaacttggtcaagagctattcatat--ggatcct |
103 |
Q |
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| T |
11816186 |
caaaaggaataaaagaggtaatctacatattttcaggctatataataccaaaaggatggaaagtgttaacttggtcaagagctattcatatatggatcct |
11816087 |
T |
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| Q |
104 |
acaaattatctcaacccggagaaatttaatccatcgagatggaatgtgagttgtattgaattgtattgtataatctaaaaccctatttttggaagataca |
203 |
Q |
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| T |
11816086 |
acaaattatcccaacccggagaaatttaatccatcgagatggaatgtgagttgtattg-----tattgtataatctaaaaccctatttttggaagataca |
11815992 |
T |
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| Q |
204 |
aacaaaagtacttgt--atattagtgttttattttcatatgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtaggcac |
301 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11815991 |
aacaaaagtacttgtgtatattagtgtttt-ttttcatatgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtaggcac |
11815893 |
T |
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| Q |
302 |
tgtcctggaagtgacttg |
319 |
Q |
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| T |
11815892 |
tgtcctgggagtgacttg |
11815875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 11826308 - 11826175
Alignment:
| Q |
31 |
catattttcaggctatataataccaaaaggatggaaagtgttaacttggtcaagagc----tattcatatggatcctacaaattatctcaacccggagaa |
126 |
Q |
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| T |
11826308 |
catatttttaggttatataataccgaaaggatggaaagtgttaccttggttaagagctatatattcacatggatcctacatattatccaaactcggatga |
11826209 |
T |
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| Q |
127 |
atttaatccatcgagatggaatgtgagttgtatt |
160 |
Q |
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| T |
11826208 |
atttaacccatcaagatggaatgtaagttgtatt |
11826175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 11800303 - 11800175
Alignment:
| Q |
32 |
atattttcaggctatataataccaaaaggatggaaagtgttaacttggtcaagagctattcatatggatcctacaaattatctcaacccggagaaattta |
131 |
Q |
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|||||| |||| ||||| || || || |||||||||||| |||| |||||||||||||||||| || |||||| ||||| ||||| || |||||| |
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| T |
11800303 |
atatttccaggttatatcatcccgaatggatggaaagtgctaacatggtcaagagctattcatcatgaacctacatattattcaaacccagatgaattta |
11800204 |
T |
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| Q |
132 |
atccatcgagatggaatgtgagttgtatt |
160 |
Q |
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| T |
11800203 |
atccatcgagatgggatgtgagttctatt |
11800175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 11800101 - 11800022
Alignment:
| Q |
240 |
atgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttg |
319 |
Q |
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| T |
11800101 |
atgttcaggatcacaaagcaaaagttggaacctttattccttttggagcaggaagtatgcattgtcctgcgagtgacttg |
11800022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 37436034 - 37436078
Alignment:
| Q |
266 |
ggaacattccttccttttggagcaggaagtaggcactgtcctgga |
310 |
Q |
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| T |
37436034 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctgga |
37436078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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