View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20305_low_1 (Length: 481)
Name: NF20305_low_1
Description: NF20305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20305_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Original strand, 24780060 - 24780515
Alignment:
| Q |
13 |
aatataagcaccggtaatcgatcttcttttctcatgattatcaaagaactc--cacatgatagagcaagcaaagaggaggaaaaaccgcatcaccctcat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780060 |
aatataagcaccggtaatcgatcttcttttctcatgattatcaaagaactctccacatgatagagcaagcaaagaggaggaaaaaccgcatcaccctcat |
24780159 |
T |
|
| Q |
111 |
ggaaccttttcattctccataaatgcacctgcaacaacaccttgtttaaggttttcttactgccacttcacatgtgttgtgtctaattgtctaccatcta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780160 |
ggaaccttttcattctccataaatgcacctgcaacaacaccttgtttaacgttttcttactgccacttcacatgtgttgtgtctaattgtctaccatcta |
24780259 |
T |
|
| Q |
211 |
tactccattcatctccaccatatattctgttatctagtcttgattaaaatgggatcatgtcattacattatttaagaaacaaaaactaatttttagattt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780260 |
tactccattcatctccaccatatattctgttatctagtcgtgattaaaatgggatcatgtcattacattatttaagaaacaaaaactaatttttagattt |
24780359 |
T |
|
| Q |
311 |
tattgtttcactaagtcttatgatattaatgaacgtgtcagacatgctaatttcaattttgaagcaagtgaggtcaaccttgatcgaagcaatttatttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780360 |
tattgtttcactaagtcttatgatattaatgaatgtgtcagacatgctaatttcaattttgaagcaagtgaggtcaaccttgatcgaagcaatttatttt |
24780459 |
T |
|
| Q |
411 |
agtttaattgtgcagaaaatacatacataatctgtcggagataacatgcatgcatt |
466 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24780460 |
agtttaattatgcagaaaatacatacataatctgtcggagataacatgcatgcatt |
24780515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University