View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20305_low_2 (Length: 474)
Name: NF20305_low_2
Description: NF20305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20305_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 28335847 - 28336286
Alignment:
| Q |
18 |
tcaagtgtttgacgttgagagaggaactttgtgtcacatatgtgggtttcctaacttccacactagagtgttagatacggttgtctgagnnnnnnnagct |
117 |
Q |
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| T |
28335847 |
tcaagtgtttgacgttgagagaggaactttgtctcacatatgtgggtttgctaacttccacactagagtgttagatacggttgtttgagtttttt-agct |
28335945 |
T |
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| Q |
118 |
acaatgataaaaggataaaaatgcaaaaatagcccgtttgattgatcgagtgtgtctattatagtgtatgaaccgagtattttatagcaaaaattatgca |
217 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28335946 |
aca-tgataaaaggataaaaatgcaaaaatagctcgtttgattgatcgagtgtgtctattatagtgtatgaaccgagtattttatagcaaaaattatgca |
28336044 |
T |
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| Q |
218 |
aaattagccgaacattgtggcctaaagtgacgagccctctctcgactaattttacattgtacatgataactcc-ttgctcagaagatcctacacattcaa |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28336045 |
aa-ttagccgaacattgtggcctaaagtgacgagccctctctcgactaattttacattgtacatgataactcccttgctcagaagatcctacacattcaa |
28336143 |
T |
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| Q |
317 |
cttcaccctcctcctgctcatagtggtcggtctgttgatatgatccttagtgcgcagtttagtggatattgtgccttttttctcgttccccaaaatggtt |
416 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28336144 |
cttcaccctcctcctgctcatagtggtc----tgttgatatgatccttagtgcgcagtttagtggatattgtgccttttttctcgttccccaaaatggtt |
28336239 |
T |
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| Q |
417 |
tgtggtgctataaacaaagaatttgactttatggtgctgatgatgat |
463 |
Q |
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| T |
28336240 |
tgtggtgctataaacaaagaatttgactttatggtgctgattatgat |
28336286 |
T |
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