View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20305_low_3 (Length: 378)
Name: NF20305_low_3
Description: NF20305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20305_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 4190553 - 4190920
Alignment:
| Q |
16 |
catgccactatataaatcattgcatatgcttactcaacgttcgatctacgtaaccaaatgtttttcactactaactttcaacaacaagaagcttttaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4190553 |
catgccactatataaatcattgcatatgcttactcaacgttcgatctacgtaaccaaatgtttttcaccactaactttcaacaacaagaagcttttaaat |
4190652 |
T |
|
| Q |
116 |
agataatttttcttactcaagcaagtagtatatgagcataaatagtgatgcataatcatgggtagacatgatttnnnnnnngtaaaatcatgggcagaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4190653 |
agataatttttcttactcaagcaagtagtatatgagcataaatagtgatgcataatcatgggtagacatgatttaaaaaaagtaaaatcatgggcagaca |
4190752 |
T |
|
| Q |
216 |
aatatggtactatata-----ctatatgttaggccatacagtaacagtcaagc----ttgtgactaattaatacacttaccataatggtggccagaagca |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4190753 |
aatatggtactatatatatatatatatgttaggccatacagtaacagtcaagcttgtttgtgactaattaatacacttgccataatggtggccagaagca |
4190852 |
T |
|
| Q |
307 |
ggtcatatactcattctaagatctatcgtctcttcttctgtttgcagccggtgacgtgcatccattga |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4190853 |
ggtcatatactcattctaagatctatcgtctcttcttctgtttgcagccggtgacgtgcatccattga |
4190920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University