View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20305_low_5 (Length: 267)

Name: NF20305_low_5
Description: NF20305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20305_low_5
NF20305_low_5
[»] chr4 (42 HSPs)
chr4 (1-119)||(43143653-43143771)
chr4 (1-116)||(6690304-6690419)
chr4 (1-116)||(30216811-30216926)
chr4 (1-119)||(42333845-42333963)
chr4 (1-116)||(3292965-3293080)
chr4 (1-119)||(20129290-20129408)
chr4 (3-116)||(50205148-50205261)
chr4 (1-119)||(26439348-26439466)
chr4 (1-119)||(34407353-34407471)
chr4 (1-116)||(10352953-10353068)
chr4 (1-119)||(25930688-25930806)
chr4 (1-121)||(47500751-47500871)
chr4 (1-119)||(13012168-13012286)
chr4 (1-119)||(43355884-43356002)
chr4 (1-89)||(17511303-17511391)
chr4 (4-119)||(29319777-29319892)
chr4 (3-110)||(30109945-30110052)
chr4 (2-116)||(28877320-28877434)
chr4 (2-119)||(48129950-48130063)
chr4 (1-116)||(29996052-29996167)
chr4 (1-116)||(48989311-48989426)
chr4 (3-99)||(36382417-36382512)
chr4 (3-82)||(44156668-44156747)
chr4 (3-121)||(30077702-30077819)
chr4 (1-116)||(26448036-26448150)
chr4 (9-116)||(45194159-45194266)
chr4 (14-116)||(27363344-27363446)
chr4 (58-119)||(7769308-7769369)
chr4 (1-75)||(35545977-35546051)
chr4 (3-116)||(40528996-40529111)
chr4 (62-116)||(49908782-49908836)
chr4 (6-74)||(6254569-6254637)
chr4 (62-116)||(5517494-5517548)
chr4 (63-116)||(6212029-6212082)
chr4 (63-116)||(17554979-17555032)
chr4 (51-116)||(13392989-13393054)
chr4 (51-116)||(13396128-13396193)
chr4 (14-115)||(20113775-20113876)
chr4 (62-115)||(50720476-50720529)
chr4 (63-121)||(12680193-12680251)
chr4 (1-64)||(1817752-1817815)
chr4 (1-44)||(6235575-6235618)
[»] chr3 (19 HSPs)
chr3 (1-119)||(11018281-11018399)
chr3 (1-116)||(45182964-45183079)
chr3 (5-119)||(6503642-6503756)
chr3 (4-116)||(33040936-33041048)
chr3 (5-116)||(6930967-6931078)
chr3 (1-119)||(39771770-39771888)
chr3 (1-119)||(22968513-22968631)
chr3 (1-119)||(6269495-6269613)
chr3 (1-119)||(27935158-27935276)
chr3 (1-99)||(19390146-19390244)
chr3 (3-116)||(19565572-19565685)
chr3 (1-99)||(34084191-34084289)
chr3 (1-116)||(45335858-45335972)
chr3 (1-86)||(40081809-40081893)
chr3 (3-116)||(35514249-35514358)
chr3 (3-77)||(5135291-5135365)
chr3 (62-116)||(6890981-6891035)
chr3 (42-115)||(22922141-22922214)
chr3 (1-116)||(5354692-5354807)
[»] chr8 (15 HSPs)
chr8 (1-119)||(34136894-34137012)
chr8 (1-116)||(23402091-23402206)
chr8 (1-119)||(4403988-4404106)
chr8 (1-101)||(16788094-16788194)
chr8 (1-116)||(29728455-29728570)
chr8 (9-112)||(36408538-36408641)
chr8 (10-116)||(2729274-2729380)
chr8 (1-119)||(39914495-39914612)
chr8 (1-85)||(3648863-3648947)
chr8 (1-83)||(3435285-3435367)
chr8 (1-99)||(15838286-15838383)
chr8 (1-77)||(9877242-9877318)
chr8 (14-112)||(10397122-10397220)
chr8 (6-76)||(40470567-40470637)
chr8 (1-67)||(42230971-42231035)
[»] chr7 (22 HSPs)
chr7 (1-119)||(34389125-34389243)
chr7 (1-119)||(5555467-5555585)
chr7 (1-116)||(8867800-8867915)
chr7 (1-116)||(33685547-33685662)
chr7 (1-116)||(37002213-37002328)
chr7 (1-119)||(3114165-3114283)
chr7 (1-120)||(14777176-14777295)
chr7 (1-122)||(43184537-43184658)
chr7 (2-90)||(35090177-35090265)
chr7 (1-116)||(26624728-26624844)
chr7 (1-99)||(8394125-8394223)
chr7 (1-99)||(36630816-36630914)
chr7 (3-116)||(7002708-7002821)
chr7 (3-116)||(7048579-7048692)
chr7 (3-80)||(40920074-40920151)
chr7 (1-76)||(38638305-38638380)
chr7 (1-81)||(36658199-36658279)
chr7 (9-112)||(26502797-26502899)
chr7 (9-112)||(26589815-26589917)
chr7 (54-101)||(10876829-10876876)
chr7 (63-115)||(37966614-37966666)
chr7 (1-40)||(10868544-10868583)
[»] chr5 (23 HSPs)
chr5 (1-116)||(17332620-17332735)
chr5 (1-116)||(31501785-31501900)
chr5 (1-116)||(31680350-31680465)
chr5 (1-116)||(12278929-12279044)
chr5 (1-119)||(37254621-37254739)
chr5 (1-116)||(13817960-13818075)
chr5 (1-116)||(10033910-10034025)
chr5 (1-119)||(39434676-39434794)
chr5 (1-119)||(36293690-36293808)
chr5 (1-121)||(26283387-26283507)
chr5 (1-85)||(33430335-33430419)
chr5 (1-97)||(1776445-1776541)
chr5 (1-99)||(39657575-39657673)
chr5 (5-81)||(16155015-16155091)
chr5 (2-86)||(28801300-28801384)
chr5 (2-97)||(19985941-19986036)
chr5 (3-120)||(3155702-3155819)
chr5 (1-116)||(36291354-36291469)
chr5 (1-69)||(16333945-16334013)
chr5 (1-80)||(43068896-43068975)
chr5 (14-116)||(202622-202724)
chr5 (205-251)||(41369689-41369735)
chr5 (69-116)||(26543902-26543949)
[»] chr2 (23 HSPs)
chr2 (1-116)||(45418566-45418681)
chr2 (1-116)||(8147334-8147449)
chr2 (1-120)||(42439965-42440084)
chr2 (1-96)||(41251703-41251798)
chr2 (3-116)||(8059404-8059517)
chr2 (1-116)||(44084672-44084787)
chr2 (1-116)||(770977-771097)
chr2 (2-121)||(2958171-2958289)
chr2 (1-119)||(6403873-6403991)
chr2 (1-119)||(35962695-35962813)
chr2 (1-121)||(17445110-17445228)
chr2 (1-119)||(18981597-18981714)
chr2 (5-119)||(32127214-32127328)
chr2 (1-101)||(26237955-26238054)
chr2 (1-99)||(31581691-31581789)
chr2 (4-81)||(12756909-12756986)
chr2 (3-96)||(16405603-16405696)
chr2 (9-90)||(7072627-7072710)
chr2 (1-112)||(4555280-4555390)
chr2 (1-80)||(26162768-26162847)
chr2 (69-116)||(34523223-34523270)
chr2 (20-79)||(34905969-34906028)
chr2 (4-74)||(2285887-2285957)
[»] chr6 (16 HSPs)
chr6 (1-121)||(28996708-28996828)
chr6 (1-119)||(34948827-34948945)
chr6 (1-121)||(398595-398715)
chr6 (1-99)||(18339106-18339204)
chr6 (1-116)||(29743266-29743381)
chr6 (1-119)||(13837801-13837919)
chr6 (14-115)||(24697899-24698000)
chr6 (3-113)||(31028435-31028545)
chr6 (1-83)||(33229405-33229487)
chr6 (63-121)||(13646995-13647053)
chr6 (14-115)||(24695472-24695572)
chr6 (63-116)||(34385519-34385572)
chr6 (62-113)||(2753336-2753387)
chr6 (21-84)||(3050094-3050157)
chr6 (62-116)||(21149331-21149385)
chr6 (22-71)||(24072576-24072625)
[»] chr1 (15 HSPs)
chr1 (2-119)||(35907532-35907649)
chr1 (1-119)||(26144235-26144353)
chr1 (1-120)||(7433424-7433543)
chr1 (3-116)||(41972346-41972458)
chr1 (1-116)||(42311010-42311125)
chr1 (1-116)||(17445296-17445411)
chr1 (3-99)||(32982127-32982223)
chr1 (1-116)||(3828967-3829082)
chr1 (1-116)||(321446-321561)
chr1 (4-116)||(33489670-33489782)
chr1 (1-120)||(23313217-23313337)
chr1 (63-121)||(44352614-44352672)
chr1 (62-116)||(31866960-31867014)
chr1 (34-116)||(48901207-48901288)
chr1 (14-80)||(35951427-35951493)
[»] scaffold0154 (1 HSPs)
scaffold0154 (3-116)||(31463-31576)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-119)||(17822-17940)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-119)||(480526-480644)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-119)||(502-620)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-99)||(5230-5328)
[»] scaffold0041 (1 HSPs)
scaffold0041 (3-80)||(52944-53021)
[»] scaffold0769 (1 HSPs)
scaffold0769 (69-116)||(1260-1307)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-106)||(194021-194118)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 43143653 - 43143771
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43143653 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcg 43143752  T
Q  101 gacggtgaaaccgcccatg 119  Q
    |||||||||||||||||||    
T  43143753 gacggtgaaaccgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 6690304 - 6690419
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6690304 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 6690403  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  6690404 ggcggtgaaaccgccc 6690419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30216811 - 30216926
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30216811 gcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 30216910  T
Q  101 gacggtgaaaccgccc 116  Q
    ||||||||| ||||||    
T  30216911 gacggtgaatccgccc 30216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 42333845 - 42333963
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |    
T  42333845 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctg 42333944  T
Q  101 gacggtgaaaccgcccatg 119  Q
    ||||||||||||| |||||    
T  42333945 gacggtgaaaccgtccatg 42333963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 3292965 - 3293080
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |    
T  3292965 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactg 3293064  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  3293065 ggcggtgaaaccgccc 3293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 20129408 - 20129290
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  20129408 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 20129309  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  20129308 cacggtggaaccgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 50205148 - 50205261
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  50205148 ccaattttttctttttgtaagtgtgttaattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccgga 50205247  T
Q  103 cggtgaaaccgccc 116  Q
    ||||||||||||||    
T  50205248 cggtgaaaccgccc 50205261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 26439348 - 26439466
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  26439348 gcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgcta 26439447  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  26439448 cacggtggaaccgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 34407353 - 34407471
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  34407353 gcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgcta 34407452  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  34407453 cacggtggaaccgcccatg 34407471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 10352953 - 10353068
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||| |||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  10352953 gcccaaatttttccttttgtaaatgtgttaatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccg 10353052  T
Q  101 gacggtgaaaccgccc 116  Q
    ||||||||||||||||    
T  10353053 gacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 25930806 - 25930688
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||     
T  25930806 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgcca 25930707  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  25930706 tacggtagaaccgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 47500871 - 47500751
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||  ||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  47500871 gcccaaatttttcttttcataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 47500772  T
Q  101 gacggtgaaaccgcccatgtt 121  Q
     |||||| |||||||||||||    
T  47500771 cacggtggaaccgcccatgtt 47500751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 13012286 - 13012168
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13012286 gcccaaatttttctttttataaatgtgttaatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 13012187  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  13012186 cacggtggaaccgcccatg 13012168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 43356002 - 43355884
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||      
T  43356002 gcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgcta 43355903  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  43355902 cacggtggaaccgcccatg 43355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17511303 - 17511391
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcc 89  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  17511303 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgcc 17511391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 29319777 - 29319892
Alignment:
Q  4 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggac 103  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||  ||    
T  29319777 caaatttttctttttgtaaatgtgttaatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatac 29319876  T
Q  104 ggtgaaaccgcccatg 119  Q
    |||  |||||||||||    
T  29319877 ggtagaaccgcccatg 29319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 30110052 - 30109945
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||||||||||||||||||||||| | |||| || ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||     
T  30110052 ccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcggg 30109953  T
Q  103 cggtgaaa 110  Q
    ||||||||    
T  30109952 cggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 28877320 - 28877434
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 101  Q
    ||||||||||||||||| |||| ||||||||| |||||| |||||| |||||||||||||||||||||||| |||||  |||||||| |||||||  |||    
T  28877320 cccaaatttttctttttataagcgtgttaattagcttttaggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcgg 28877419  T
Q  102 acggtgaaaccgccc 116  Q
    |||||||||||||||    
T  28877420 acggtgaaaccgccc 28877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 48130063 - 48129950
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 101  Q
    |||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||     |||||||||    
T  48130063 cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccga----ggtcgccgg 48129968  T
Q  102 acggtgaaaccgcccatg 119  Q
     |||| ||||||||||||    
T  48129967 gcggttaaaccgcccatg 48129950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 29996052 - 29996167
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||| |||| ||||||||| | ||||| ||||||||||||||| |||||||||||||||||| |||| |||||| ||||| ||| ||    
T  29996052 gcccaaatttttcttttcgtaaatgtgttaatggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcg 29996151  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  29996152 ggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 48989426 - 48989311
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||| | |||||| |||| || |||||||||||||||||||||||| |||||  |||||||||| |||| ||    
T  48989426 gcccaaatttttctttttgtaagtgtgttaatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcg 48989327  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||| ||||    
T  48989326 ggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 36382417 - 36382512
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    ||||||||||||||| |||| ||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36382417 ccaaatttttctttt-gtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 44156747 - 44156668
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggc 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  44156747 ccaaaattttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 30077702 - 30077819
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||||||||||||| |||||||||   ||||| ||||| ||||||||||||||| |||||||| ||||| ||||||||||||| ||||| |||     
T  30077702 ccaaatttttctttttgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cggg 30077800  T
Q  103 cggtgaaaccgcccatgtt 121  Q
    |||||||||||||| ||||    
T  30077801 cggtgaaaccgcccctgtt 30077819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26448150 - 26448036
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||   | ||||||||||||||||||||||||| |||| ||| ||| ||| |||||||    
T  26448150 gcccaaattttt-tttttgtaagtgtgttaatggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccg 26448052  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  26448051 ggcggtgaaaccgccc 26448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 45194266 - 45194159
Alignment:
Q  9 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtga 108  Q
    |||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||| |||||| | |||| ||||||| ||| ||||||    
T  45194266 ttttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgtcgggcggtga 45194167  T
Q  109 aaccgccc 116  Q
    ||| ||||    
T  45194166 aactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 27363446 - 27363344
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 113  Q
    ||||||||||||||||||| ||||||||||||| | ||||| ||||||||   ||||||||||||||||||||||||| |||||||  ||||| ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  114 ccc 116  Q
    |||    
T  27363346 ccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  58 caaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35546051 - 35545977
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 75  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||    
T  35546051 gcccaaaattttctttttgtaagtgtgttaattggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 40529111 - 40528996
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac--cgcccggggtcgccg 100  Q
    |||||||||||||||||||| |||||||||  | |||| |||||||| ||||||||||||||||||||||||| |||| ||||  ||||| ||||||||     
T  40529111 ccaaatttttctttttgtaaatgtgttaatgagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgcca 40529012  T
Q  101 gacggtgaaaccgccc 116  Q
     |||||  ||||||||    
T  40529011 tacggtagaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 49908782 - 49908836
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  6 aatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcga 74  Q
    ||||||| |||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 5517494 - 5517548
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 6212029 - 6212082
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 17555032 - 17554979
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 13392989 - 13393054
Alignment:
Q  51 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    |||| ||||||| | |||||| ||||||||||||||| |||||||||| || ||||||||||||||    
T  13392989 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 13396128 - 13396193
Alignment:
Q  51 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    |||| ||||||| | |||||| ||||||||||||||| |||||||||| || ||||||||||||||    
T  13396128 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13396193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 20113876 - 20113775
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 113  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||  | ||||||||||| |||  |||||||  | ||||||||||| | ||||| |||||    
T  20113876 tttttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcgccaggcggtggaaccg 20113777  T
Q  114 cc 115  Q
    ||    
T  20113776 cc 20113775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 50720476 - 50720529
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 115  Q
    |||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 12680193 - 12680251
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatgtt 121  Q
    |||||||||||||||||||| |||||| ||||| || || |||||||||||||| ||||    
T  12680193 attatcgatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcccctgtt 12680251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1817815 - 1817752
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaat 64  Q
    |||||||||||||||||| ||| ||| ||||| | ||||||| |||  ||||||||||||||||    
T  1817815 gcccaaatttttctttttataaatgtattaatggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6235618 - 6235575
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggt 44  Q
    |||||||||||||||||||||| ||||||||| | |||||||||    
T  6235618 gcccaaatttttctttttgtaaatgtgttaatggacttttgggt 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 11018281 - 11018399
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  11018281 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccg 11018380  T
Q  101 gacggtgaaaccgcccatg 119  Q
    |||||||||||||||||||    
T  11018381 gacggtgaaaccgcccatg 11018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45183079 - 45182964
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45183079 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 45182980  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  45182979 ggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 6503642 - 6503756
Alignment:
Q  5 aaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacg 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6503642 aaatttttctttttgtaagtgtgctaattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacg 6503741  T
Q  105 gtgaaaccgcccatg 119  Q
    |||||||||||||||    
T  6503742 gtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 33041048 - 33040936
Alignment:
Q  4 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggac 103  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |    
T  33041048 caaatttttctttttgtaagtgtgttaattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggc 33040949  T
Q  104 ggtgaaaccgccc 116  Q
    |||||||||||||    
T  33040948 ggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 6930967 - 6931078
Alignment:
Q  5 aaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacg 104  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  6930967 aaatttttctttttgtaaatgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcg 6931066  T
Q  105 gtgaaaccgccc 116  Q
    ||||||||||||    
T  6931067 gtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39771888 - 39771770
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  39771888 gcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgcta 39771789  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  39771788 cacggtggaaccgcccatg 39771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22968513 - 22968631
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||      
T  22968513 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgcta 22968612  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  22968613 cacggtagaaccgcccatg 22968631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6269495 - 6269613
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||      
T  6269495 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgcta 6269594  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  6269595 cacggtagaaccgcccatg 6269613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 27935276 - 27935158
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||| |||     
T  27935276 gcccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgcca 27935177  T
Q  101 gacggtgaaaccgcccatg 119  Q
    | |||||||||| ||||||    
T  27935176 ggcggtgaaaccacccatg 27935158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 19390244 - 19390146
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19390244 gcccaaatttttctttttgtaaatgtgttaatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 19565572 - 19565685
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||||||||||||| ||||||||| |  |||| ||||| |||||||||||||||||||||||| || |||||||||||||||||| |||||||     
T  19565572 ccaaatttttctttttgtaaatgtgttaatggattttttggttgggtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccggg 19565671  T
Q  103 cggtgaaaccgccc 116  Q
    ||||||||||||||    
T  19565672 cggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 34084191 - 34084289
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||| ||||||||| | ||||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34084191 gcccaaatttttctttttgtaaatgtgttaatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45335972 - 45335858
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||| |||||||||||||||| ||||||||| | ||||| ||||| |||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||    
T  45335972 gcccagatttttctttttgtaaatgtgttaat-gactttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccg 45335874  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  45335873 ggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40081809 - 40081893
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 86  Q
    |||||||||||||||||||||| |||||||||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  40081809 gcccaaatttttctttttgtaaatgtgttaatgagcttttgg-ttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 35514358 - 35514249
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    ||||||||||||||||||    |||||||| | |||||||||||  |||| | ||| ||||||||||||||||||||| |||||| |||||||||||||     
T  35514358 ccaaatttttctttttgt----gtgttaatggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccggg 35514263  T
Q  103 cggtgaaaccgccc 116  Q
    ||||||||| ||||    
T  35514262 cggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 5135365 - 5135291
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 77  Q
    ||||||||||||||||||||||||||||||  |||||| ||||| ||||||||| ||||||| ||||||||||||    
T  5135365 ccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcc 5135291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 6891035 - 6890981
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 22922214 - 22922141
Alignment:
Q  42 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 115  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||||  |||||| |||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5354807 - 5354692
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||| ||||| |||||  |||||||| ||| ||| | | |||||   ||||||||  |||||||  ||||||||||||||||||||||||||||||||    
T  5354807 gcccaatttttttttttttgaagtgtgtaaatgggcctataggttggacctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgccg 5354708  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||| ||||    
T  5354707 ggcggtgaaactgccc 5354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 34136894 - 34137012
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  34136894 gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgcca 34136993  T
Q  101 gacggtgaaaccgcccatg 119  Q
    |||||||||||| ||||||    
T  34136994 gacggtgaaaccacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 23402206 - 23402091
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  23402206 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccg 23402107  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  23402106 ggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 4404106 - 4403988
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4404106 gcccaaatttttctttttgtaagtatgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccg 4404007  T
Q  101 gacggtgaaaccgcccatg 119  Q
    | | ||||||||| |||||    
T  4404006 gccagtgaaaccgtccatg 4403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 16788094 - 16788194
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16788094 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccg 16788193  T
Q  101 g 101  Q
    |    
T  16788194 g 16788194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 29728455 - 29728570
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||     
T  29728455 gcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgcca 29728554  T
Q  101 gacggtgaaaccgccc 116  Q
     |||||  ||||||||    
T  29728555 tacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 36408641 - 36408538
Alignment:
Q  9 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtga 108  Q
    |||||||||||||| ||||||||| | |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  36408641 ttttctttttgtaaatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtga 36408542  T
Q  109 aacc 112  Q
    ||||    
T  36408541 aacc 36408538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 2729274 - 2729380
Alignment:
Q  10 tttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaa 109  Q
    ||||||||| ||||||||||||| ||||||||| |||  | ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  2729274 tttctttttataagtgtgttaatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaa 2729373  T
Q  110 accgccc 116  Q
    |||||||    
T  2729374 accgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39914612 - 39914495
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||| ||||| ||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  39914612 gcccaaattttt-tttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 39914514  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| ||||| |||||    
T  39914513 cacggtggaaccgtccatg 39914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 3648863 - 3648947
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 85  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3648863 gcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3435367 - 3435285
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcg 83  Q
    |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  3435367 gcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15838383 - 15838286
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    ||||||||||||||||| |||| ||||||||| | ||||| |||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  15838383 gcccaaatttttctttt-gtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9877318 - 9877242
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  9877318 gcccaaatttttctttttgtaagtgtgttaattgacttttgggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 10397122 - 10397220
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaacc 112  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||| | ||||||||||| ||||||||||||  |||||| |||||||| ||||| ||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaacc 10397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  6 aatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 76  Q
    ||||||| ||||| ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42231035 - 42230971
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattat 67  Q
    ||||||||||||||||||||||  |||||||| | |||||| ||||  | |||||||||||||||||    
T  42231035 gcccaaatttttctttttgtaa--gtgttaatggacttttgagttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 34389125 - 34389243
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34389125 gcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 34389224  T
Q  101 gacggtgaaaccgcccatg 119  Q
    | |||||||| ||||||||    
T  34389225 ggcggtgaaatcgcccatg 34389243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5555585 - 5555467
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5555585 gcccaaatttttctttttgtaaatgcgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 5555486  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  5555485 tacggtagaaccgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8867800 - 8867915
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8867800 gcccaaatttttctttttgtaaatgtattaattggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 8867899  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||| ||||    
T  8867900 ggcggtgaaactgccc 8867915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 33685662 - 33685547
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  33685662 gcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccg 33685563  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  33685562 ggcggtgaaaccgccc 33685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 37002213 - 37002328
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  37002213 gcccaaatttttctttttgtaagtgtgttaattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccg 37002312  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  37002313 ggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3114165 - 3114283
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  3114165 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcacca 3114264  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  3114265 tacggtagaaccgcccatg 3114283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14777176 - 14777295
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      
T  14777176 gcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcta 14777275  T
Q  101 gacggtgaaaccgcccatgt 120  Q
     |||||  ||||||||||||    
T  14777276 cacggtagaaccgcccatgt 14777295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43184537 - 43184658
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | ||||||||||||||||||||| ||||||||||||  ||||||    
T  43184537 gcccaaatttttctttttgtaagtatgttaattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccg 43184636  T
Q  101 gacggtgaaaccgcccatgttc 122  Q
    | |||||||||||||| |||||    
T  43184637 ggcggtgaaaccgcccctgttc 43184658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 35090265 - 35090177
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgccc 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  35090265 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26624844 - 26624728
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcg-atcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||| ||||||| |||||||||||||| ||||||||| |||||||||||||||| |||    
T  26624844 gcccaaatttttctttttgtaagtgtgttaattaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgcc 26624745  T
Q  100 ggacggtgaaaccgccc 116  Q
    || ||||||||||||||    
T  26624744 gggcggtgaaaccgccc 26624728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8394223 - 8394125
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    ||||||||||||| |||||||| ||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394223 gcccaaatttttccttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36630914 - 36630816
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36630914 gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 7002821 - 7002708
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||| |||||||| |||||||||||||||||||||||| || ||||||  ||||||  |||||||||||||||||||||| ||||||||||||     
T  7002821 ccaaatttttatttttgtatgtgtgttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccggg 7002722  T
Q  103 cggtgaaaccgccc 116  Q
    ||||||||||||||    
T  7002721 cggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 7048692 - 7048579
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||| |||||||| |||||||||||||||||||||||| || ||||||  ||||||  |||||||||||||||||||||| ||||||||||||     
T  7048692 ccaaatttttatttttgtatgtgtgttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccggg 7048593  T
Q  103 cggtgaaaccgccc 116  Q
    ||||||||||||||    
T  7048592 cggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 40920074 - 40920151
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 80  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  40920074 ccaaatttttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38638305 - 38638380
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 76  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||    
T  38638305 gcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatctaatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36658279 - 36658199
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 81  Q
    |||||||||||| ||||||| ||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  36658279 gcccaaatttttatttttgttagtatgttaattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 26502899 - 26502797
Alignment:
Q  9 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtga 108  Q
    |||| |||||||| |||||||||| ||||||||||||| |  |||| ||||||||   ||||||||||||||||||| ||| |||||||||  ||||||     
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26502801  T
Q  109 aacc 112  Q
    ||||    
T  26502800 aacc 26502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 26589815 - 26589917
Alignment:
Q  9 ttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtga 108  Q
    |||| |||||||| |||||||||| ||||||||||||| |  |||| ||||||||   ||||||||||||||||||| ||| |||||||||  ||||||     
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26589913  T
Q  109 aacc 112  Q
    ||||    
T  26589914 aacc 26589917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 10876829 - 10876876
Alignment:
Q  54 tgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 101  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgccgg 10876876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 37966614 - 37966666
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 115  Q
    |||||||||||||| ||| |||||||| | ||||||||| |||||||||||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaaccgcc 37966666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10868544 - 10868583
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggctttt 40  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  10868544 gcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 17332620 - 17332735
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  17332620 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccg 17332719  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  17332720 ggcggtgaaaccgccc 17332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31501785 - 31501900
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  31501785 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccg 31501884  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  31501885 ggcggtgaaaccgccc 31501900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 31680465 - 31680350
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  31680465 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 31680366  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  31680365 ggcggtgaaaccgccc 31680350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12278929 - 12279044
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  12278929 gcccaaatttttctttttgtaagtgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccg 12279028  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  12279029 ggcggtgaaaccgccc 12279044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 37254739 - 37254621
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  37254739 gcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccg 37254640  T
Q  101 gacggtgaaaccgcccatg 119  Q
      |||||||||||||||||    
T  37254639 agcggtgaaaccgcccatg 37254621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13818075 - 13817960
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  13818075 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcca 13817976  T
Q  101 gacggtgaaaccgccc 116  Q
     |||||  ||||||||    
T  13817975 tacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10034025 - 10033910
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||     
T  10034025 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgcca 10033926  T
Q  101 gacggtgaaaccgccc 116  Q
     |||||  ||||||||    
T  10033925 tacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39434794 - 39434676
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  39434794 gcccaaatttttcattttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgcca 39434695  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  39434694 cacggtagaaccgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 36293690 - 36293808
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||     
T  36293690 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgcca 36293789  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  36293790 cacggtagaaccgcccatg 36293808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26283387 - 26283507
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  26283387 gcccaaatttttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgcta 26283486  T
Q  101 gacggtgaaaccgcccatgtt 121  Q
     |||||| |||||||||||||    
T  26283487 cacggtggaaccgcccatgtt 26283507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33430419 - 33430335
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  33430419 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1776445 - 1776541
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 97  Q
    |||||||||||||||||||||| ||||||||| | ||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  1776445 gcccaaatttttctttttgtaaatgtgttaatggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39657575 - 39657673
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||  |||||| | |||||||||    
T  39657575 gcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcc 39657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 16155091 - 16155015
Alignment:
Q  5 aaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 81  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16155091 aaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 28801384 - 28801300
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 86  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||| ||||||||    
T  28801384 cccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 19986036 - 19985941
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 97  Q
    ||||||||||||||||||||| |||| |||| | |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  19986036 cccaaatttttctttttgtaaatgtgctaatggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3155702 - 3155819
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||||||||| ||| ||||||||| | ||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |||||  |    
T  3155702 ccaaatttttctttttataaatgtgttaatggacttttaggttgagtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccata 3155801  T
Q  103 cggtgaaaccgcccatgt 120  Q
    || |  ||||||||||||    
T  3155802 cgatagaaccgcccatgt 3155819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 36291469 - 36291354
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| |||||||||   ||||| ||||   ||||||||||||||||||| |||||| ||||| ||||||||||| |||| ||    
T  36291469 gcccaaatttttctttttgtaaatgtgttaatgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcg 36291370  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  36291369 ggcggtgaaaccgccc 36291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16333945 - 16334013
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcg 69  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  16333945 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43068975 - 43068896
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 80  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  43068975 gcccaaatttttctttttgtaaatgtgttaatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 202724 - 202622
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 113  Q
    ||||||| ||||| ||||| ||||||||||||    ||||||| || |||||||||||||||||||||||||| ||  |||||| ||| |||||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  114 ccc 116  Q
    |||    
T  202624 ccc 202622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 41369689 - 41369735
Alignment:
Q  205 acatattagagttcaaatcagcaatggaggaatcaataaagttattg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41369689 acatattagagttcaaatcagcaatggaggaatcaataaagttattg 41369735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 26543902 - 26543949
Alignment:
Q  69 gatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26543902 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45418681 - 45418566
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45418681 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 45418582  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  45418581 ggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8147449 - 8147334
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8147449 gcccaaatttttctttttgtaagtgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccg 8147350  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  8147349 ggcggtgaaaccgccc 8147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42440084 - 42439965
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42440084 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 42439985  T
Q  101 gacggtgaaaccgcccatgt 120  Q
     |||||  ||||||||||||    
T  42439984 tacggtagaaccgcccatgt 42439965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 41251703 - 41251798
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 96  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251703 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 8059404 - 8059517
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| || ||||||||| |||     
T  8059404 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcggg 8059503  T
Q  103 cggtgaaaccgccc 116  Q
    ||||||||||||||    
T  8059504 cggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 44084672 - 44084787
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||   ||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44084672 gcccaaatttttctttttgtaagtgtgttaatgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccg 44084771  T
Q  101 gacggtgaaaccgccc 116  Q
    | ||||||||||||||    
T  44084772 ggcggtgaaaccgccc 44084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 771097 - 770977
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgg-----ggt 95  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||     |||    
T  771097 gcccaaatttttctttttgtaagtgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggt 770998  T
Q  96 cgccggacggtgaaaccgccc 116  Q
    |||||| ||||||||||||||    
T  770997 cgccgggcggtgaaaccgccc 770977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 2958171 - 2958289
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 101  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||      
T  2958171 cccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aaaattatcgatcgagcccggacgaccgcccggggtcgccat 2958269  T
Q  102 acggtgaaaccgcccatgtt 121  Q
    |||||  |||||||||||||    
T  2958270 acggtagaaccgcccatgtt 2958289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6403873 - 6403991
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6403873 gcccaaatttttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 6403972  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  6403973 cacggtggaaccgcccatg 6403991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 35962813 - 35962695
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||     
T  35962813 gcccaaaattttctttttgtaaatgtgttaataagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgcca 35962714  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  35962713 tacggtagaaccgcccatg 35962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 17445110 - 17445228
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| |||||||     
T  17445110 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgcca 17445207  T
Q  101 gacggtgaaaccgcccatgtt 121  Q
     |||||  |||||||||||||    
T  17445208 cacggtagaaccgcccatgtt 17445228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18981714 - 18981597
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||     
T  18981714 gcccaaatttttctttttgtaaatgttttaatggacttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgccc-gggtcgcca 18981616  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  18981615 tacggtagaaccgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 32127214 - 32127328
Alignment:
Q  5 aaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacg 104  Q
    |||||||||||||||||| |||||||||  |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||  |||    
T  32127214 aaatttttctttttgtaaatgtgttaatgagcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacg 32127313  T
Q  105 gtgaaaccgcccatg 119  Q
     |  |||||||||||    
T  32127314 ctagaaccgcccatg 32127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26238054 - 26237955
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||| | ||||||| |||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  26238054 gcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcccggggtcgccg 26237956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 31581691 - 31581789
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  31581691 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcc 31581789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 12756909 - 12756986
Alignment:
Q  4 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 81  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  12756909 caaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccggg 12756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 16405696 - 16405603
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 96  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  16405696 ccaaatttttctttttataaatgtgttaatgagcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 7072627 - 7072710
Alignment:
Q  9 ttttctttttgtaagtgtgt--taattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgccc 90  Q
    |||||||||| |||||||||  |||| |||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  7072627 ttttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4555280 - 4555390
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||| |||||||||||||||||||||||   |||||||||||| || | ||||||||||||||||||||||| ||  ||||||||||| | ||||||    
T  4555280 gcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtcc-agcgaccgcccgagatcgccg 4555378  T
Q  101 gacggtgaaacc 112  Q
    | ||||| ||||    
T  4555379 ggcggtggaacc 4555390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26162768 - 26162847
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 80  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| | ||||||| ||||||||||||  ||||||||    
T  26162768 gcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaattatcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 34523270 - 34523223
Alignment:
Q  69 gatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  20 taagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccg 79  Q
    ||||||||||||| ||||||||||||  |  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 2285957 - 2285887
Alignment:
Q  4 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcga 74  Q
    |||||||||| ||| |||| ||||||||| | ||||| |||||  | ||||||||||||||||||||||||    
T  2285957 caaatttttcctttcgtaaatgtgttaatagactttttggttggatttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 28996828 - 28996708
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  28996828 gcccaaatttttctttttgtaagtgtgttaattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccg 28996729  T
Q  101 gacggtgaaaccgcccatgtt 121  Q
    | |||||||||||||| ||||    
T  28996728 ggcggtgaaaccgcccctgtt 28996708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 34948827 - 34948945
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  34948827 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcca 34948926  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  34948927 tacggtagaaccgcccatg 34948945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 398715 - 398595
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  398715 gcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 398616  T
Q  101 gacggtgaaaccgcccatgtt 121  Q
     |||||| |||||||||||||    
T  398615 cacggtggaaccgcccatgtt 398595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18339204 - 18339106
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18339204 gcccaaaattttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29743381 - 29743266
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||| ||||| |||||||||   ||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||| ||| ||    
T  29743381 gcccaaatttttctttctgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcg 29743282  T
Q  101 gacggtgaaaccgccc 116  Q
    ||||||||||||||||    
T  29743281 gacggtgaaaccgccc 29743266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 13837919 - 13837801
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| |||||| ||  |||||||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||     
T  13837919 gcccaaatttttctttttgtaaatgtgttgatgtgcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgcca 13837820  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  13837819 tacggtagaaccgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 24697899 - 24698000
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 113  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||| ||||||||||||  | ||||||||||||| |||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  114 cc 115  Q
    ||    
T  24697999 cc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 31028435 - 31028545
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    ||||| ||| |||||||||| |||||||||  |||||| |||||  ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||     
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  103 cggtgaaaccg 113  Q
    |||||||||||    
T  31028535 cggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33229405 - 33229487
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcg 83  Q
    ||||||||||||||||||| || ||||||||| | ||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  33229405 gcccaaatttttctttttggaaatgtgttaatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 13647053 - 13646995
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatgtt 121  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccctgtt 13646995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 24695572 - 24695472
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 113  Q
    ||||||||||||||||||| ||||||||||||||| |||||||  |||||| ||||||  |||| ||||||  | ||| ||||  |||||||||||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgatttagcctgggcgagtgtccgaggtc-tcggacggtgaaaccg 24695474  T
Q  114 cc 115  Q
    ||    
T  24695473 cc 24695472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 34385519 - 34385572
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 2753387 - 2753336
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 113  Q
    |||||||||| |||| ||||||||||||  ||||||||||||||||||||||    
T  2753387 aattatcgattgagctcgggcgaccgcctagggtcgccggacggtgaaaccg 2753336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 3050157 - 3050094
Alignment:
Q  21 aagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 84  Q
    |||||||||||| ||||||| ||||| |   |||||||||||||||| ||| ||||||||||||    
T  3050157 aagtgtgttaatgggcttttcggttgcgctcaatgtgcaaaaattattgattgagcccgggcga 3050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 21149331 - 21149385
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||| |||||| ||||||||||| |||| |||| ||||||||| ||||    
T  21149331 aattatcgatcaagcccgagcgaccgcccgaggtcaccgggcggtgaaactgccc 21149385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 24072625 - 24072576
Alignment:
Q  22 agtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgat 71  Q
    ||||||||||| || |||||||||   |||||||||||||||||||||||    
T  24072625 agtgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 35907649 - 35907532
Alignment:
Q  2 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 101  Q
    |||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  35907649 cccaaaattttctttttgtaagtgtactaattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgg 35907550  T
Q  102 acggtgaaaccgcccatg 119  Q
     |||||||||||||||||    
T  35907549 gcggtgaaaccgcccatg 35907532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26144353 - 26144235
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26144353 gcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 26144254  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  26144253 cacggtggaaccgcccatg 26144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 7433543 - 7433424
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||     
T  7433543 gcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgcca 7433444  T
Q  101 gacggtgaaaccgcccatgt 120  Q
     |||||  ||||||||||||    
T  7433443 tacggtagaaccgcccatgt 7433424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 41972346 - 41972458
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||||||| || ||||||||||||||||||| |||    
T  41972346 ccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctgga 41972444  T
Q  103 cggtgaaaccgccc 116  Q
    ||||| ||||||||    
T  41972445 cggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 42311010 - 42311125
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||     
T  42311010 gcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgcca 42311109  T
Q  101 gacggtgaaaccgccc 116  Q
     |||||  ||||||||    
T  42311110 tacggtagaaccgccc 42311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17445411 - 17445296
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||| |||||||||| |||| |||||||||||||||  ||||||||||    
T  17445411 gcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccg 17445312  T
Q  101 gacggtgaaaccgccc 116  Q
    | |  |||||||||||    
T  17445311 ggcaatgaaaccgccc 17445296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 32982127 - 32982223
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  32982127 ccaaatttttctttttgtaaatatgttaatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3829082 - 3828967
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| || |||||||||||||||||||||||| |||| ||||||| ||||||| ||||    
T  3829082 gcccaaatttttctttttgtaagtgtgttaatgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccg 3828983  T
Q  101 gacggtgaaaccgccc 116  Q
    |  | |||||||||||    
T  3828982 ggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 321446 - 321561
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||  |||||||  ||||||||||||||||||||||| ||||||||||   ||||||    
T  321446 gcccaaatttttctttttgtaactgtgttaatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccg 321545  T
Q  101 gacggtgaaaccgccc 116  Q
    |  |||||||||||||    
T  321546 ggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 33489782 - 33489670
Alignment:
Q  4 caaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggac 103  Q
    |||||||||||||| |||||||||||||| ||||||| | ||||||||||||| ||||||||||||| | | ||||  |||||| |||||||||||||      
T  33489782 caaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcgaacaatcccgaacgaccgtccggggtcgccgggt 33489683  T
Q  104 ggtgaaaccgccc 116  Q
    |||||||||||||    
T  33489682 ggtgaaaccgccc 33489670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 23313337 - 23313217
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaa-aaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    |||||||||||||||||||||| |||||||||   |||||  |||||||||||||||||| |||| ||| ||||||||||||| |||||||| | |||||    
T  23313337 gcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatcgcc 23313238  T
Q  100 ggacggtgaaaccgcccatgt 120  Q
      |||||  ||||||||||||    
T  23313237 atacggtagaaccgcccatgt 23313217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 44352614 - 44352672
Alignment:
Q  63 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatgtt 121  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctgtt 44352672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 31867014 - 31866960
Alignment:
Q  62 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 48901207 - 48901288
Alignment:
Q  34 ggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||| | |||||||||| |||||||||||||| ||| ||| ||||||||| || ||||| ||||| ||||||||    
T  48901207 ggcttttgggttgggcctaatgtgcataaattatcgatcga-ccccggccaccgcccggagttgccgggcggtggaaccgccc 48901288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 35951427 - 35951493
Alignment:
Q  14 tttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 80  Q
    ||||||| ||||||||||| |||| |||||||    ||||||| |||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccgg 35951493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 31576 - 31463
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||||     
T  31576 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccggg 31477  T
Q  103 cggtgaaaccgccc 116  Q
    || |||||||||||    
T  31476 cgatgaaaccgccc 31463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 17940 - 17822
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||     
T  17940 gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgcca 17841  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||  |||||||||||    
T  17840 cacggtagaaccgcccatg 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 480526 - 480644
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  480526 gcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcta 480625  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  480626 cacggtggaaccgcccatg 480644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 620 - 502
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 100  Q
    |||||||||||||||||| ||| |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      
T  620 gcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgcta 521  T
Q  101 gacggtgaaaccgcccatg 119  Q
     |||||| |||||||||||    
T  520 cacggtggaaccgcccatg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5328 - 5230
Alignment:
Q  1 gcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 99  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5328 gcccaaaattttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 53021 - 52944
Alignment:
Q  3 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 80  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  53021 ccaaatttttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 1307 - 1260
Alignment:
Q  69 gatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 116  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1307 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 194118 - 194021
Alignment:
Q  8 tttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggt 106  Q
    ||||| |||||| |||||||| ||| ||| | | ||||| | ||||||||   ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  194118 tttttttttttg-aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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