View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20305_low_6 (Length: 215)
Name: NF20305_low_6
Description: NF20305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20305_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5586276 - 5586077
Alignment:
| Q |
1 |
ggtacatggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggcctattgggctgcactccaagtgccatctttactcatgg |
100 |
Q |
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| T |
5586276 |
ggtacatggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggtctattgggctgcactccaagtgccatctttactcatgg |
5586177 |
T |
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| Q |
101 |
gacagatgggtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctctgct |
200 |
Q |
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| T |
5586176 |
gacagatgggtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctctgct |
5586077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5592545 - 5592346
Alignment:
| Q |
1 |
ggtacatggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggcctattgggctgcactccaagtgccatctttactcatgg |
100 |
Q |
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| T |
5592545 |
ggtatatgtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcctattgggctgcactccaagtgccatccttactcatga |
5592446 |
T |
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| Q |
101 |
gacagatgggtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctctgct |
200 |
Q |
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| T |
5592445 |
gacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaaatctttagtggatcatttcaataataagttctctgct |
5592346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 5575793 - 5575607
Alignment:
| Q |
10 |
aacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggcctattgggctgcactccaagtgccatctttactcatgggacagatgg |
109 |
Q |
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| T |
5575793 |
aacagactttacatgacattggagctagaaaatatgtgttagtagggttaggccttttgggctgcacaccaagtgccatctttactcatggaacaaacgg |
5575694 |
T |
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| Q |
110 |
gtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctc |
196 |
Q |
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| T |
5575693 |
gtcctgcgttgatgaggaaaatgcccctgcattgattttcaatttcaagcttaaatttttagtggatcatttcaataataagttctc |
5575607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 5572712 - 5572667
Alignment:
| Q |
155 |
caagcttaaatctctagtggatcatttcaataataagttctctgct |
200 |
Q |
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| T |
5572712 |
caagcttaaatctctagtggaacatttcaataataagttctctgct |
5572667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 5580531 - 5580486
Alignment:
| Q |
155 |
caagcttaaatctctagtggatcatttcaataataagttctctgct |
200 |
Q |
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| T |
5580531 |
caagcttaaatctctagtggaacatttcaataataagttctctgct |
5580486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 5580614 - 5580576
Alignment:
| Q |
12 |
caggctttacatgaaattggagcaagaaaatatgtgtta |
50 |
Q |
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| T |
5580614 |
caggctctacatgacattggagcaagaaaatatgtgtta |
5580576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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