View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20306_low_2 (Length: 243)
Name: NF20306_low_2
Description: NF20306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20306_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 25058285 - 25058466
Alignment:
| Q |
13 |
atgaattccatcactaaaaaataatcaaatcacctaattaaatcattgaaatgcatatttgatatatattttttaatatagggacatacatatatgagag |
112 |
Q |
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| T |
25058285 |
atgaattccatcactaaaaaataaccaaatcatctaattaaatcattgaaatgcaaatttgatatatatttattaatatagggacatacatatatgagag |
25058384 |
T |
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| Q |
113 |
cacacttacatgaaacaaacttctttccaatcttctcttctctgaattaaagaccacaaatcaatggccttgatattcatat |
194 |
Q |
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| T |
25058385 |
cacacttacatgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcatat |
25058466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 25084109 - 25084283
Alignment:
| Q |
11 |
agatgaattccatcactaaaaaataatcaaatcacctaattaaatcattgaaatgcatatttgatatatattttttaatatagggacatacatatatgag |
110 |
Q |
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||||||| ||||||||||| ||||||||||||| ||||||||||| ||||| | || |||||| |||| |||| | |||| |||||| || ||| |
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| T |
25084109 |
agatgaactccatcactaagaaataatcaaatcccctaattaaattattgataaacaaatttgaaatat----tttagt-taggtgcatacaaat--gag |
25084201 |
T |
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| Q |
111 |
agcacacttacatgaaacaaacttctttccaatcttctcttctctgaattaaagaccacaaatcaatggccttgatattcat |
192 |
Q |
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| T |
25084202 |
atcgtacttacacgaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcat |
25084283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 25062588 - 25062674
Alignment:
| Q |
106 |
atgagagcacacttacatgaaacaaacttctttccaatcttctcttctctgaattaaagaccacaaatcaatggccttgatattcat |
192 |
Q |
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| T |
25062588 |
atgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcat |
25062674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 25090485 - 25090575
Alignment:
| Q |
102 |
atatatgagagcacacttacatgaaacaaacttctttccaatcttctcttctctgaattaaagaccacaaatcaatggccttgatattcat |
192 |
Q |
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| T |
25090485 |
atatacgagatcatacttacatgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcat |
25090575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 25071202 - 25071377
Alignment:
| Q |
11 |
agatgaattccatcactaaaaaataatcaaatcacctaattaaatcattgaaatgcatatttgatatatattttttaatatagggacatacatatatgag |
110 |
Q |
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||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| || ||||| ||| ||||| | | || ||||| | ||| | |
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| T |
25071202 |
agatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaata----ttttagttttggtgcatac--aaatgcg |
25071295 |
T |
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| Q |
111 |
agcacacttacatgaaacaaacttctttccaatcttctcttctctgaattaaagaccacaaatcaatggccttgatattcat |
192 |
Q |
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| T |
25071296 |
accatacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcat |
25071377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 25062499 - 25062543
Alignment:
| Q |
11 |
agatgaattccatcactaaaaaataatcaaatcacctaattaaat |
55 |
Q |
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| T |
25062499 |
agatgaactccatcactaagaaataatcaaaccacctaattaaat |
25062543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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