View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20307_high_11 (Length: 310)
Name: NF20307_high_11
Description: NF20307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20307_high_11 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 25067 - 25354
Alignment:
| Q |
1 |
ccatgctcttcaggttcgattaaactcccatttcattaattttcaacaagtttagcttcaattaactccttgaatctatgaaaatgattattttttgttt |
100 |
Q |
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| T |
25067 |
ccatgctcttcaggttcgattaaactcccattccattaattatcaacaagttttgcttcaattaactccttgaatctatgaaaat-attattttttgttt |
25165 |
T |
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| Q |
101 |
ctttaactggtgtttcagggacacccgttggcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttttt |
200 |
Q |
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| T |
25166 |
ctttaactggtgtttcaggggcacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgacttttt |
25265 |
T |
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| Q |
201 |
cgggatggaattagataacagaaagaataaagataaggtggagacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
289 |
Q |
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| T |
25266 |
cgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
25354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 39821 - 39945
Alignment:
| Q |
162 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtgga---gacaattgatctaatg |
258 |
Q |
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| T |
39821 |
cttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatg |
39920 |
T |
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| Q |
259 |
gatgggttgatgcaaattgaagatg |
283 |
Q |
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| T |
39921 |
gatgggttgatgcaaattgaagatg |
39945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 32435 - 32558
Alignment:
| Q |
160 |
tacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggagacaattgatctaatgg |
259 |
Q |
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|||| |||||||||||||||||||||| | || ||| | || ||||||||||||| || ||||| | || ||||||| || |||| ||||||||||| |
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| T |
32435 |
tactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatgg |
32534 |
T |
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| Q |
260 |
atgggttgatgcaaattgaagatg |
283 |
Q |
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| T |
32535 |
atgggttgatgcaaattgaagatg |
32558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 151 - 289
Target Start/End: Complemental strand, 5008 - 4870
Alignment:
| Q |
151 |
taacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggagacaattg |
250 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
5008 |
taacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattg |
4909 |
T |
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| Q |
251 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
289 |
Q |
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| T |
4908 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
4870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5101 - 5023
Alignment:
| Q |
1 |
ccatgctcttcaggttcgattaaactcccatttcattaattttcaacaagtttagcttcaattaactccttgaatctat |
79 |
Q |
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| T |
5101 |
ccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctat |
5023 |
T |
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