View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20307_high_9 (Length: 325)
Name: NF20307_high_9
Description: NF20307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20307_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 43184261 - 43184396
Alignment:
| Q |
2 |
atatagacaccaggagtcgacttgttatcacctctattcacatctatttctattttctaacaattgtagatgatcacactcatcatggtttatgttacga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43184261 |
atatagacaccaggagtcgacttgttatcacctctattcacatctatttctattttctaacaactgtagatgatcacactcatcatggtttatgttacga |
43184360 |
T |
|
| Q |
102 |
aatccaaagatgaaaacatacaaagaactgggggac |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43184361 |
aatccaaagatgaaagcatacaaagaactgggggac |
43184396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 43184461 - 43184560
Alignment:
| Q |
202 |
ccaacctaaattgcaataattaatagcttaattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43184461 |
ccaacctaaattgcaataattaatagcttgattaaaatacttatgattaggcaaatacacagtaagaaccgtgagtattttcaatatggttatggtgatg |
43184560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University