View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_high_1 (Length: 892)
Name: NF20308_high_1
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 40007308 - 40007894
Alignment:
| Q |
1 |
ccatgaagataaacaaaccaggaaacctagttaatggaagcacaaaagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007308 |
ccatgaagataaacaaaccaggaaacctagttaatggaagcacaaaagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacaca |
40007407 |
T |
|
| Q |
101 |
tggatttccaattgttttccatgtccctaagattgtctcagctgaatgaacaagtgcttcatttggtgcccatccagtgcaacctgatgtaaccatgtaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40007408 |
tggatttccaattgtttcccatgtccctaagattgtctcagctgaatgaacaagtgcttcatttggtgcccatccagtgcaacctgatgtaaccatgtaa |
40007507 |
T |
|
| Q |
201 |
tatgttcccttgtgtttgaacatagccggcgcttctcttcgctgaccgacgaaaattcttttcataacagatgtcacattgagataatcttcagtcaagg |
300 |
Q |
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| T |
40007508 |
tatgttcccttgtgtttgaacatagccggcgcttctcttcgctgaccgacgaaaattcttttcataacagatgtcacattgagataatcttcagtcaagg |
40007607 |
T |
|
| Q |
301 |
gtccaatgtgcattacattgttttcttcagatgagtatattagatatgcaacattgtcttcatctttgaaaagtgtcatgtccctgctttgatatccatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40007608 |
gtccaatgtgcattacattgttttcttcagatgagtatattagatatgcaacattgtcttcatctttgaaaagtgtcatgtccctgctttgatatcgatg |
40007707 |
T |
|
| Q |
401 |
aggtctttggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggaagctttggcgtaattggcgttgtcgatatgcatc |
500 |
Q |
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| T |
40007708 |
aggtctttggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggtagctttggcgtaattggcgttgtcgatatgcatc |
40007807 |
T |
|
| Q |
501 |
cacatcacatactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagatcatgtgttttatct |
587 |
Q |
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| T |
40007808 |
cacatcacatactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagatcatgtgttttatct |
40007894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 581 - 874
Target Start/End: Complemental strand, 40007320 - 40007027
Alignment:
| Q |
581 |
tttatcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgcctttgattgttgatggacatgaagatcaagcatttc |
680 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40007320 |
tttatcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgcctttaattgttgatggacatgaagatcaagcatttc |
40007221 |
T |
|
| Q |
681 |
aatatggttttgataacacattgtggccaagagtttctatctattggcacaaaaaatggaaactgcctttgggttggagcacattctaatgatgggtttt |
780 |
Q |
| |
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| T |
40007220 |
aatatggttttgataacaaattgtggccaagagtttctatctattggcacaaaaaatggaaactgcctttgggttggaacacattctaatgatgggtttt |
40007121 |
T |
|
| Q |
781 |
tgttgttgtacatttgtttaatttgcaatttcatcgaggaagcataaatccttaagaggtgtatccatgcaacagtgtcgtcagaagagacctt |
874 |
Q |
| |
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| T |
40007120 |
tgttgttgtacatttgtttaatttgcaatttcatcgaggaagcataaatccttaagaggtgtatccatgcaacagtgtcgtcagaagagacctt |
40007027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 74 - 587
Target Start/End: Complemental strand, 5353703 - 5353190
Alignment:
| Q |
74 |
tctaaacattttgtttccagcaacacatggatttccaattgttttccatgtccctaagattgtctcagctgaatgaacaagtgcttcatttggtgcccat |
173 |
Q |
| |
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|||||||||||||||||| | | ||||||||||| ||||||| ||| | ||| | ||||| ||| |||| ||| | ||||| |||||||| ||||| |
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| T |
5353703 |
tctaaacattttgtttcctcccaagcatggatttcccattgtttcccacggccccatgattgactctgctgcatgcgccagtgcctcatttggggcccac |
5353604 |
T |
|
| Q |
174 |
ccagtgcaacctgatgtaaccatgtaatatgttcccttgtgtttgaacatagccggcgcttctcttcgctgaccgacgaaaattcttttcataacagatg |
273 |
Q |
| |
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|| |||||||| ||||||| |||||| ||||| |||| || ||||| | |||||| ||||||| | || || |||| ||| ||| |||| ||||||| |
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| T |
5353603 |
cccgtgcaacccgatgtaatcatgtagtatgtaccctgatgcttgaagagagccggtgcttctcggtgttgtcccacgagaatccttctcatgacagatg |
5353504 |
T |
|
| Q |
274 |
tcacattgagataatcttcagtcaagggtccaatgtgcattacattgttttcttcagatgagtatattagatatgcaacattgtcttcatctttgaaaag |
373 |
Q |
| |
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|||||||||||||||||| || |||||||| ||||||| || |||| ||||| || ||||| | || ||||||||| || || |||||||||| |
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| T |
5353503 |
tcacattgagataatcttgggttaagggtcctatgtgcagctcactgttgtcttcggaggagtagactatatatgcaacgccatcatcgtctttgaaaac |
5353404 |
T |
|
| Q |
374 |
tgtcatgtccctgctttgatatccatgaggtctttggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggaagctttg |
473 |
Q |
| |
|
|||||| |||||||||| |||| || || || ||||| ||||| || ||||| ||||| ||| | ||||||| ||||| |||||| || |||||| |
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| T |
5353403 |
tgtcatatccctgctttcgaatccgtgcggcctgtggctaccgagataattgaaaggaccatcaggtgcgtcactgattgctacgccaacagacgctttg |
5353304 |
T |
|
| Q |
474 |
gcgtaattggcgttgtcgatatgcatccacatcacatactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagat |
573 |
Q |
| |
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| ||| || || | || |||||||||||||||||||||||| || || ||||||||||| |||||||| ||||| ||||| || || ||||| |||| |
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| T |
5353303 |
gtgtagttagcatcatcaatatgcatccacatcacatacttttcagtcttctcattgtaaatcacttttggcctctcgagcacgttagatttgtgcagat |
5353204 |
T |
|
| Q |
574 |
catgtgttttatct |
587 |
Q |
| |
|
|||| |||| |||| |
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|
| T |
5353203 |
catgggtttcatct |
5353190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 651
Target Start/End: Original strand, 5353767 - 5353834
Alignment:
| Q |
584 |
atcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgcctttgat |
651 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||| |||||||| || |||||||| ||||| |||||||| |
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|
| T |
5353767 |
atcttcatggcagatcgatggaatccagctgacttaagagactcgagatatgtatggttacctttgat |
5353834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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