View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_high_11 (Length: 475)
Name: NF20308_high_11
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 22 - 465
Target Start/End: Complemental strand, 32158324 - 32157881
Alignment:
| Q |
22 |
acttataccccactgggacataatattttgccaaaaacgattggtcttattggtaagattattgtcgaccatggttgatccagttggtaagatatgacac |
121 |
Q |
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| T |
32158324 |
acttataccccaccgggacataatattttaccaaaaacgattgttcttattggtaagattattgtcgaccatggttgatccagttggtaagatatgacac |
32158225 |
T |
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| Q |
122 |
atggcttcaaaatatttacctgtgagggcattggttcgaaatagttgatccggttggtaagatatgatacatatgtaattactctttagtccatgatgtc |
221 |
Q |
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| T |
32158224 |
atggcttcaaaatatttacatgtgagggcattggttcgaaatagttgatccagttggtaagatatgatacatatgtaattactctttagtccatgatgtc |
32158125 |
T |
|
| Q |
222 |
tatccagaacatggagattctttgagattcaactcacctaaacttttaaatatataatgaaattactgcaaggttgcatctatgccgagagaccacttga |
321 |
Q |
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| T |
32158124 |
tatccagaacatggagactctttgagatccaactcacctaaacttttatatatatgatgaaattactgcaaggttgcatctatgccgagagaccacttga |
32158025 |
T |
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| Q |
322 |
atgcaattctatgatattattttgttcatgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgtgataatttttcta |
421 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32158024 |
atgtaattgtatgatattattttgttcatgtcaaatatttgttagaaactagttataataataacataattttaaactaatgtttgtgataatttttcta |
32157925 |
T |
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| Q |
422 |
cagatgacactttcaggactattgaatgcgacagatggtctctg |
465 |
Q |
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| T |
32157924 |
cagatgacactttcgggactattgaatgcgacagatggtctctg |
32157881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 32110703 - 32110602
Alignment:
| Q |
350 |
tgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgt-gataatttttctacagatgacactttcaggactattgaat |
448 |
Q |
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|||||| ||||| | ||||| |||||||||| || |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
32110703 |
tgtcaactatttttcagaaaatagttataatgatgacattattttaaactaatgtttgttgatactttttcaacagatgacactttcaggactattgaat |
32110604 |
T |
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| Q |
449 |
gc |
450 |
Q |
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|| |
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| T |
32110603 |
gc |
32110602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 32211879 - 32211933
Alignment:
| Q |
397 |
actaatgtttgt-gataatttttctacagatgacactttcaggactattgaatgc |
450 |
Q |
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| T |
32211879 |
actaatgtttgttggtaatttttctacagatgacactttcgggactattgaatgc |
32211933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 32182677 - 32182636
Alignment:
| Q |
421 |
acagatgacactttcaggactattgaatgcgacagatggtct |
462 |
Q |
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| T |
32182677 |
acaggtgacactttcaggactattgaatgcgacagatggtct |
32182636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 2821104 - 2821158
Alignment:
| Q |
22 |
acttataccccact--gggacataatattttgccaaaaacgattggtcttattgg |
74 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
2821104 |
acttataccccacacgggggcataatattttgccaaaaacgattggtcttattgg |
2821158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 32156826 - 32156786
Alignment:
| Q |
410 |
ataatttttctacagatgacactttcaggactattgaatgc |
450 |
Q |
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||||||| || |||| ||||||||||||||||||||||||| |
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| T |
32156826 |
ataatttgtcaacaggtgacactttcaggactattgaatgc |
32156786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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