View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_high_12 (Length: 467)
Name: NF20308_high_12
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 112 - 453
Target Start/End: Original strand, 3122189 - 3122533
Alignment:
| Q |
112 |
aaattcaactttaatagttgtatcataa----ttggtacaaacaactgaaattagttagcttgtttatgcttacttttccaagctaaactaactgtgttt |
207 |
Q |
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| T |
3122189 |
aaattcaaatttaatagttgtatcataaataattgttacaaacaactgaaattagttagcttgcttatgctggcttttccaaactcaactaattgtgttt |
3122288 |
T |
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| Q |
208 |
caaacaaattcaaatttcttttcttgtcatagcacaacaaggacgtaaacatgagacttgtgtgagggcacaaataactactagctattagctatatagg |
307 |
Q |
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| T |
3122289 |
caaacaaattcaaatttcttttcttgtcatagcacaacaaggacgaaaacatgagacttgtgtgaaggcacaaataactactagctattagctatatagg |
3122388 |
T |
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| Q |
308 |
aaaaatgatgtacatagatgcaacataacatgttatcaaagctataannnnnnnnccattcctataaacaaagattgttttttcttaggcaannnnnnna |
407 |
Q |
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| T |
3122389 |
aaaaatgatgtacatagatgcaacagaacatgttatcaaagctataattttttttccatccctataaacaaagattgttttttcttaggcaa-tttttta |
3122487 |
T |
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| Q |
408 |
tttctaatccattatcctcatattaagtgagtccaaaatcgtaatt |
453 |
Q |
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| T |
3122488 |
tttctaatccattatcctcatattaagtgagtccaaaatcgtaatt |
3122533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 3122103 - 3122194
Alignment:
| Q |
1 |
ttatattatcttatcttgtttgctgcatttatcctacttttattcttttagtattggtctttgttggacatatgcttaacagtttaaaattc |
92 |
Q |
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| T |
3122103 |
ttatattatcttatcttgtttggtgcatttatcctacttttattcttttagtattggtctttgttggacatatgcttaaaagtttaaaattc |
3122194 |
T |
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