View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_high_13 (Length: 449)

Name: NF20308_high_13
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_high_13
NF20308_high_13
[»] chr1 (4 HSPs)
chr1 (78-436)||(31919382-31919743)
chr1 (7-62)||(31919733-31919788)
chr1 (301-380)||(49579656-49579737)
chr1 (301-378)||(49579071-49579150)
[»] chr6 (2 HSPs)
chr6 (289-338)||(197235-197284)
chr6 (301-360)||(196587-196648)
[»] chr2 (1 HSPs)
chr2 (296-339)||(1297263-1297307)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 78 - 436
Target Start/End: Complemental strand, 31919743 - 31919382
Alignment:
Q  78 gatttctccttgtgcggcttagccttaggggtgagaatatgttagattagcttacagagccctaggtttaagctttttcaaatatctttttaattaaata 177  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  31919743 gatttctccttgtgcggcttaaccctaggggtgagaatatgttagattggcttacagagccctaggtttaagctttttcaaatgtctttttaatcaaata 31919644  T
Q  178 ggtcatgcttagacacataaatcaacctattaagcctgatatatcaatctatttaataaataagtattatttttgtagaacctacttatttatataataa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31919643 ggtcatgcttagacacataaatcaacctattaagcctgatatatcaatctatttaataaataagtattatttttgtagaacctacttatttatataataa 31919544  T
Q  278 acactcatctcaaaattagaagttgtgttttagcattgaacacctttttatttagac--aaaacccctacttttctttttgaaaataagtcattttgaag 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| |||||||||||||||||||    
T  31919543 acactcatctcaaaattagaagttgtgttttagcattgaacacctttttatttagacaaaaaacccttacttttctttttaaaaataagtcattttgaag 31919444  T
Q  376 ggcaagcttgtcatttgacatttaaatttatta-tttaataaatgctttaatcaagctcttc 436  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31919443 ggcaagcttgtaatttgacatttaaatttattattttaataaatgctttaatcaagctcttc 31919382  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 31919788 - 31919733
Alignment:
Q  7 atgaccccatataatttgaaggtgggataaaccataagatcacaagatttctcctt 62  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31919788 atgaccccatataatttgaaggtgggataaaccatatgatcacaagatttctcctt 31919733  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 49579737 - 49579656
Alignment:
Q  301 tgtgttttagcattgaacacctttttatttagacaaa--acccctacttttctttttgaaaataagtcattttgaagggcaa 380  Q
    |||||||||||||  ||||||||||||||||||||||  |||||  ||||||||| | |||||||||||  |||||| ||||    
T  49579737 tgtgttttagcatacaacacctttttatttagacaaaacaccccatcttttctttctaaaaataagtcaaattgaagagcaa 49579656  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 49579071 - 49579150
Alignment:
Q  301 tgtgttttagcattgaacacctttttatttagacaaa--acccctacttttctttttgaaaataagtcattttgaagggc 378  Q
    ||||||||||||   ||||||||||||||| ||||||  ||||| ||||| ||||||||||| ||||||  |||||||||    
T  49579071 tgtgttttagcaaacaacacctttttatttggacaaaacaccccaactttcctttttgaaaacaagtcaagttgaagggc 49579150  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 197284 - 197235
Alignment:
Q  289 aaaattagaagttgtgttttagcattgaacacctttttatttagacaaaa 338  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||| ||||    
T  197284 aaaaatagaaggtgtgttttagcattgaacaccttttgatttagagaaaa 197235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 196587 - 196648
Alignment:
Q  301 tgtgttttagcattgaacacctttttatttagac--aaaacccctacttttctttttgaaaa 360  Q
    |||| |||||||||||||||||||| |||| |||  ||||| || |||||||||||||||||    
T  196587 tgtggtttagcattgaacaccttttgatttggacaaaaaactccaacttttctttttgaaaa 196648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 1297263 - 1297307
Alignment:
Q  296 gaagttgtgttttagcattgaacacctt-tttatttagacaaaac 339  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||    
T  1297263 gaaggtgtgttttagcattgaacaccttctttatttggacaaaac 1297307  T

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