View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_high_20 (Length: 373)

Name: NF20308_high_20
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_high_20
NF20308_high_20
[»] scaffold1052 (3 HSPs)
scaffold1052 (94-220)||(771-897)
scaffold1052 (219-360)||(584-738)
scaffold1052 (10-96)||(962-1048)
[»] chr2 (3 HSPs)
chr2 (94-221)||(6182526-6182653)
chr2 (1-96)||(6182718-6182813)
chr2 (219-360)||(6182346-6182497)
[»] chr1 (3 HSPs)
chr1 (94-221)||(5101261-5101386)
chr1 (1-96)||(5101451-5101546)
chr1 (219-360)||(5101079-5101232)
[»] chr3 (3 HSPs)
chr3 (94-221)||(32356299-32356427)
chr3 (1-96)||(32356492-32356587)
chr3 (228-360)||(32356119-32356261)
[»] scaffold0268 (2 HSPs)
scaffold0268 (276-340)||(20445-20509)
scaffold0268 (167-221)||(20592-20646)
[»] chr7 (1 HSPs)
chr7 (276-339)||(10200413-10200476)
[»] chr4 (1 HSPs)
chr4 (1-46)||(19039054-19039099)


Alignment Details
Target: scaffold1052 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 897 - 771
Alignment:
Q  94 ggacatgggtacaacgctgtttcgaatccagattccaacatcaaaccaaaaagccaagttttaaaacacatattccttttccactttacccacaacaaca 193  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||   |||||||    
T  897 ggacatgggtacaacgctgtttcgaatccatattccaacatcaaaccaaaaaaacaagttttaaaacacatattccttttccactttacctctaacaaca 798  T
Q  194 acaacaatgaatttgtgtgtcctattt 220  Q
    |||||||||||||||||||||||||||    
T  797 acaacaatgaatttgtgtgtcctattt 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 738 - 584
Alignment:
Q  219 ttgaaagcccaaattgaattaattaaaactcaagttttacaaaactcaatgagagacgtatatccattaataatt-------------tctataatttaa 305  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||             |||||| |||||    
T  738 ttgaaagtccaaattgaattaattaaatctcaagttttacaaaactcaatgaaagacgtatatccattaatgattggccttaatgatttctatagtttaa 639  T
Q  306 tttgattgagatgacaaaggaatgagatgaaattgaaaaaccatatgtttatagt 360  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  638 tttgattgaaataacaaaggaatgagatgaaattgaaaaaccatatgtttatagt 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 1048 - 962
Alignment:
Q  10 aagaacatattgagttcacaaagaggaataagaagaatggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 96  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1048 aagaacatattgagttcacaaagaggaataagaagataggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 6182653 - 6182526
Alignment:
Q  94 ggacatgggtacaacgctgtttcgaatccagattccaacatcaaaccaaaaagccaagttttaaaacacatattccttttccactttacccacaacaaca 193  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||  ||||||||    
T  6182653 ggacatgggtacaacgctgtttcgaatccatattccaacatcaaaccaaaaaaacaagttttaaaacacatattcctttttcactctaccttcaacaaca 6182554  T
Q  194 acaacaatgaatttgtgtgtcctatttg 221  Q
    ||||||||||||||||||||||||||||    
T  6182553 acaacaatgaatttgtgtgtcctatttg 6182526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6182813 - 6182718
Alignment:
Q  1 ccttgaacaaagaacatattgagttcacaaagaggaataagaagaatggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 96  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6182813 ccttgaacaaagaacatattgaattcacaatgaggaataagaagaatggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 6182718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 6182497 - 6182346
Alignment:
Q  219 ttgaaagcccaaattgaattaattaaaactcaagttttacaaaactcaatgagagacgta----------tatccattaataatttctataatttaattt 308  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||          |   | ||||| ||||||||||||||||||    
T  6182497 ttgaaagttcaaattgaattaattaaaactcaagttttacaaaactcaatgacagacgtaccattaatgattggccttaatgatttctataatttaattt 6182398  T
Q  309 gattgagatgacaaaggaatgagatgaaattgaaaaaccatatgtttatagt 360  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  6182397 gattgagataacaaaggaatgagatgaaattgaaaaatcatatgtttatagt 6182346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 5101386 - 5101261
Alignment:
Q  94 ggacatgggtacaacgctgtttcgaatccagattccaacatcaaaccaaaaagccaagttttaaaacacatattccttttccactttacccacaacaaca 193  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||  ||||||||    
T  5101386 ggacatgggtacaatgctgttccgaatccagattccaacatcaaaccaaaaaaacaagttttaaaacac--attccttttccactttaccttcaacaaca 5101289  T
Q  194 acaacaatgaatttgtgtgtcctatttg 221  Q
    ||||||||||||||||||||||||||||    
T  5101288 acaacaatgaatttgtgtgtcctatttg 5101261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 5101546 - 5101451
Alignment:
Q  1 ccttgaacaaagaacatattgagttcacaaagaggaataagaagaatggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 96  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101546 ccttgaacaaagaacatattgagttcacaaagaagaataagaagaatggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 5101451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 5101232 - 5101079
Alignment:
Q  219 ttgaaagcccaaattgaattaattaaaactcaagttttacaaaactcaatgagagacgtatatccattaataatt-------------tctataatttaa 305  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||             ||||||||||||    
T  5101232 ttgaaagtccaaattgaattaattaaaactcaagttttacaaaactcaatgac-gacgtatatccattaatgattggccttaatgatttctataatttaa 5101134  T
Q  306 tttgattgagatgacaaaggaatgagatgaaattgaaaaaccatatgtttatagt 360  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5101133 tttgattgagataacaaaggaatgagatgaaattgaaaaaccatatgtttatagt 5101079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 32356427 - 32356299
Alignment:
Q  94 ggacatgggtacaacgctgtttcgaatccagattccaacatcaaaccaaaaagc-caagttttaaaacacatattccttttccactttacccacaacaac 192  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||   |||||||||||||||||||||||||| |||| ||||  |||||||    
T  32356427 ggacatgggtacaacgctgtttcgaatccagattccaaaatcaaacaaaaaaaaacaagttttaaaacacatattcctttttcactctaccttcaacaac 32356328  T
Q  193 aacaacaatgaatttgtgtgtcctatttg 221  Q
    |||||||||||||||||||||||||||||    
T  32356327 aacaacaatgaatttgtgtgtcctatttg 32356299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32356587 - 32356492
Alignment:
Q  1 ccttgaacaaagaacatattgagttcacaaagaggaataagaagaatggtgcaagagaaatgaagagaagcaaacggaacactggagtgacgagga 96  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32356587 ccttgaacaaagaacatattgaattcacaatgaggaataagaagaatggtgcaagagaaatgaagagaagcaaacagaacactggagtgacgagga 32356492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 360
Target Start/End: Complemental strand, 32356261 - 32356119
Alignment:
Q  228 caaattgaattaattaaaactcaagttttacaaaactcaatgagagacgta----------tatccattaataatttctataatttaatttgattgagat 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||          |   | ||||| |||||||||||||||||||||||||||    
T  32356261 caaattgaattaattaaaacttaagttttacaaaactcaatgacagacgtaccattaatgattggccttaatgatttctataatttaatttgattgagat 32356162  T
Q  318 gacaaaggaatgagatgaaattgaaaaaccatatgtttatagt 360  Q
     ||||||||||||||||||||||||||| ||||||||||||||    
T  32356161 aacaaaggaatgagatgaaattgaaaaatcatatgtttatagt 32356119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 20509 - 20445
Alignment:
Q  276 gtatatccattaataatttctataatttaatttgattgagatgacaaaggaatgagatgaaattg 340  Q
    |||||||||||||| |||||||||||  |||||| ||||||| ||||||||| | ||||||||||    
T  20509 gtatatccattaatgatttctataatccaatttgtttgagataacaaaggaaggggatgaaattg 20445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 20646 - 20592
Alignment:
Q  167 tccttttccactttacccacaacaacaacaacaatgaatttgtgtgtcctatttg 221  Q
    |||||||||| |||||   ||||||||||||||||| | ||||||||||||||||    
T  20646 tccttttccattttacttccaacaacaacaacaatggaattgtgtgtcctatttg 20592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 10200413 - 10200476
Alignment:
Q  276 gtatatccattaataatttctataatttaatttgattgagatgacaaaggaatgagatgaaatt 339  Q
    |||||||||||||| |||||||||||  |||||| ||||||| ||||||||| | |||||||||    
T  10200413 gtatatccattaatgatttctataatccaatttgtttgagataacaaaggaaggggatgaaatt 10200476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19039099 - 19039054
Alignment:
Q  1 ccttgaacaaagaacatattgagttcacaaagaggaataagaagaa 46  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||    
T  19039099 ccttgaacaaaggacatgttgagttcacgaagaggaataagaagaa 19039054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University