View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_high_38 (Length: 204)
Name: NF20308_high_38
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_high_38 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 38951150 - 38951353
Alignment:
| Q |
1 |
ttccctgatcctgcgactctctctttgttcagattcctgtggctcctcaaaggtctcaggacaacccgggaataccatgccaaaatatccactacctgta |
100 |
Q |
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| T |
38951150 |
ttccctgaacctgcgactctctctctgttcagattcctgtggctcctcaaaggtctcaggacaacccgggaataccatgccaaaatatccactacctgta |
38951249 |
T |
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| Q |
101 |
attggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaatttaggtaaagatattggaagaatatcaaagtg |
200 |
Q |
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| T |
38951250 |
attggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaatttaggtaaagatattggaagaatatcaaagtg |
38951349 |
T |
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| Q |
201 |
actg |
204 |
Q |
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|||| |
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| T |
38951350 |
actg |
38951353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 38943672 - 38943863
Alignment:
| Q |
1 |
ttccctgatcctgcgactctctctttgttcagattcctgtggctcctcaaaggtctcaggacaacccgggaataccatgccaaaatatccactacctgta |
100 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38943672 |
ttccctgaacctgcgactctctctctgttcagattcctgtggctcctcaaaagtctcaggacaacccgggaataccatgccaaaatatccactacctgta |
38943771 |
T |
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| Q |
101 |
attggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaatttaggtaaagatattggaag-aatatcaaagt |
199 |
Q |
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| T |
38943772 |
attggtatagtaaaaaatacttacttctatgtga---------tcactaatat----atgcatgtaatgtaggtaaagatattggaagaaatatcaaagt |
38943858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38951084 - 38951120
Alignment:
| Q |
1 |
ttccctgatcctgcgactctctctttgttcagattcc |
37 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
38951084 |
ttccctgatcctgcgactctctccttgttcagattcc |
38951120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38943606 - 38943642
Alignment:
| Q |
1 |
ttccctgatcctgcgactctctctttgttcagattcc |
37 |
Q |
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|||||||| |||||||||||||| ||||||||||||| |
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| T |
38943606 |
ttccctgaacctgcgactctctccttgttcagattcc |
38943642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38943639 - 38943675
Alignment:
| Q |
1 |
ttccctgatcctgcgactctctctttgttcagattcc |
37 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |
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| T |
38943639 |
ttccctaatcctgcgactctctctctgttcagattcc |
38943675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38951117 - 38951153
Alignment:
| Q |
1 |
ttccctgatcctgcgactctctctttgttcagattcc |
37 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |
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| T |
38951117 |
ttccctaatcctgcgactctctctctgttcagattcc |
38951153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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