View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_high_4 (Length: 622)

Name: NF20308_high_4
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_high_4
NF20308_high_4
[»] scaffold0531 (2 HSPs)
scaffold0531 (339-604)||(3246-3511)
scaffold0531 (17-213)||(3892-4088)
[»] chr6 (8 HSPs)
chr6 (332-604)||(8031814-8032086)
chr6 (13-218)||(8031574-8031780)
chr6 (42-211)||(8040971-8041141)
chr6 (42-183)||(7972929-7973070)
chr6 (352-588)||(8041713-8041949)
chr6 (387-571)||(7979324-7979508)
chr6 (355-588)||(7971739-7971972)
chr6 (39-168)||(7979989-7980118)
[»] chr2 (4 HSPs)
chr2 (355-588)||(41382138-41382371)
chr2 (45-183)||(41382955-41383093)
chr2 (381-472)||(43853128-43853219)
chr2 (59-121)||(43851784-43851846)
[»] chr7 (2 HSPs)
chr7 (414-577)||(14198715-14198878)
chr7 (63-165)||(14199113-14199215)
[»] chr8 (1 HSPs)
chr8 (60-112)||(34408914-34408966)
[»] chr4 (1 HSPs)
chr4 (78-127)||(42986774-42986823)
[»] chr3 (1 HSPs)
chr3 (414-451)||(38827416-38827453)


Alignment Details
Target: scaffold0531 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 339 - 604
Target Start/End: Complemental strand, 3511 - 3246
Alignment:
Q  339 tcaagatttctattactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaa 438  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3511 tcaatatttctactactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaa 3412  T
Q  439 tggttcctggaaaacgttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagt 538  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3411 tggttcctggaaaacgttttgataggtaccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagt 3312  T
Q  539 agaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgatac 604  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||  |||| ||| ||||| ||||    
T  3311 agaagttggggtgaacattgtttacatggtcaccggaggtgcatcactgcgaaagttccacaatac 3246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 4088 - 3892
Alignment:
Q  17 gagggaaaaacaaattgaaaattggcttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagct 116  Q
    |||||| |||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  4088 gagggagaaacaaattgaagactggcttccaattagctcccaaaggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagct 3989  T
Q  117 ggtgttcttggtctccccttttccatggctgatcttggatggtatatttcaaaccctaattacactt-gcaagaaatattctccaaaataaaataaga 213  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||  || |||||| |||| ||||||||||||||    
T  3988 ggtgttcttggcctcccctattccatggcagctcttggatggtata-ttcaaaccctaattacacttaccatgaaatagtctctaaaataaaataaga 3892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 332 - 604
Target Start/End: Original strand, 8031814 - 8032086
Alignment:
Q  332 taatcaatcaagatttctattactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatg 431  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8031814 taatcaatcaacatttctattactcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatg 8031913  T
Q  432 catgaaatggttcctggaaaacgttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaac 531  Q
    ||||||||| |||| ||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  8031914 catgaaatgattccgggaaaacgttttgatagataccatgaattaggtcaacatgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaac 8032013  T
Q  532 ttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgatac 604  Q
    || ||||||||||||| |   ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  8032014 ttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcattgcggaagttccacaatac 8032086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 8031574 - 8031780
Alignment:
Q  13 cagagagggaaaaacaaattgaaaattggcttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttgg 112  Q
    ||||||||||||||||||||||| | ||||||||| |||  ||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  8031574 cagagagggaaaaacaaattgaagactggcttccagttagttctgaaaggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttgg 8031673  T
Q  113 agctggtgttcttggtctccccttttccatggctgatcttggatggtatatttcaaaccctaattacacttg-caagaaatattctccaaaataaaataa 211  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| || ||| ||||||| || |||||||||    
T  8031674 agctggtgttcttggtctccccttttccatggcatatcttggatggtatatttcaaaccctaattacacttgtcatgaagtattctctaacataaaataa 8031773  T
Q  212 gatacaa 218  Q
    || ||||    
T  8031774 gaaacaa 8031780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 8040971 - 8041141
Alignment:
Q  42 cttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttcca 141  Q
    ||||||| ||| |||  ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8040971 cttccaagtaattctggaaggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgttcttggtctccccttttcca 8041070  T
Q  142 tggctgatcttggatggtatatttcaaaccctaattacac-ttgcaagaaatattctccaaaataaaataa 211  Q
    |||| | |||||||||||||||||||||||||||||||||    || ||||||||||| ||||||||||||    
T  8041071 tggcagctcttggatggtatatttcaaaccctaattacacgcaccatgaaatattctctaaaataaaataa 8041141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 7973070 - 7972929
Alignment:
Q  42 cttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttcca 141  Q
    ||||||| ||| |||  ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7973070 cttccaagtaattctggaaggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgttcttggtctcccctttgcca 7972971  T
Q  142 tggctgatcttggatggtatatttcaaaccctaattacactt 183  Q
    |||| | |||||||||||||||||||||||||||||||||||    
T  7972970 tggcagctcttggatggtatatttcaaaccctaattacactt 7972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 352 - 588
Target Start/End: Original strand, 8041713 - 8041949
Alignment:
Q  352 tactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaa 451  Q
    |||||||||||||||||||| |||||||| || | |||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| |||||    
T  8041713 tactcaggggtccaggtttggctatacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaa 8041812  T
Q  452 acgttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggagtg 551  Q
    |||| |||||| |||  ||||| | || ||||| || ||||| |||||||||||  | |  |||||| |||||||||||||||| ||| | || ||   |    
T  8041813 acgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcg 8041912  T
Q  552 aacattgtctacatggtcaccggaggtgcatctttgc 588  Q
     ||||||||||||||||||||||||||||||| ||||    
T  8041913 gacattgtctacatggtcaccggaggtgcatcattgc 8041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 387 - 571
Target Start/End: Complemental strand, 7979508 - 7979324
Alignment:
Q  387 tcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaactgggacaacacg 486  Q
    ||||||||||||||  | || ||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || ||||| |    
T  7979508 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg 7979409  T
Q  487 cgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcac 571  Q
    | |||||  |||| ||||| ||||||||||||||||||||||||||||| |||||| |||| || |||||||| || ||||||||    
T  7979408 cttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcac 7979324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 355 - 588
Target Start/End: Complemental strand, 7971972 - 7971739
Alignment:
Q  355 tcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacg 454  Q
    ||||||||||||| ||| |||||||| |  | |||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||||||    
T  7971972 tcaggggtccaggattggctatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacg 7971873  T
Q  455 ttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggagtgaac 554  Q
    | |||||| |||  ||||| | || ||||| || ||||| |||||||||||  | |  |||||| |||||||||||||||| ||| | || ||   | ||    
T  7971872 tcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggac 7971773  T
Q  555 attgtctacatggtcaccggaggtgcatctttgc 588  Q
    ||||||||||||||||||||||||||||| ||||    
T  7971772 attgtctacatggtcaccggaggtgcatcattgc 7971739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 7980118 - 7979989
Alignment:
Q  39 tggcttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctcccctttt 138  Q
    |||||||||||||  ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||   |     
T  7980118 tggcttccaattacatctaaaaggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttggagctggtgttcttggtctccctcatg 7980019  T
Q  139 ccatggctgatcttggatggtatatttcaa 168  Q
    |||||||  | |||||||||||||||||||    
T  7980018 ccatggcacaacttggatggtatatttcaa 7979989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 355 - 588
Target Start/End: Complemental strand, 41382371 - 41382138
Alignment:
Q  355 tcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacg 454  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||| || ||  ||||||||||||||||||||||||| |||||||| ||||||||    
T  41382371 tcaggggtccaggtttgattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacg 41382272  T
Q  455 ttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggagtgaac 554  Q
    | |||||| |||  ||||| |||| ||||| |||||||| |||||||||||  | |  |||||| |||||||||||||||| ||| ||||||| ||| ||    
T  41382271 tcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggac 41382172  T
Q  555 attgtctacatggtcaccggaggtgcatctttgc 588  Q
    ||||||||||||||||||||||||||||| ||||    
T  41382171 attgtctacatggtcaccggaggtgcatcattgc 41382138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 41383093 - 41382955
Alignment:
Q  45 ccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttccatgg 144  Q
    |||| ||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41383093 ccaaataactctgaaagaaatgcaaaatggtggtactctactttccacaatgtcactgccatggttggagctggtgttcttggtctccccttttccatgg 41382994  T
Q  145 ctgatcttggatggtatatttcaaaccctaattacactt 183  Q
    | |  |||||||||||||||| |||||| ||||||||||    
T  41382993 cagcccttggatggtatattttaaacccaaattacactt 41382955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 43853128 - 43853219
Alignment:
Q  381 atcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatga 472  Q
    |||||||||||||| ||||| || || ||  | |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||    
T  43853128 atcttatcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatga 43853219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 43851784 - 43851846
Alignment:
Q  59 aaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgt 121  Q
    |||||||||||||||||||||| |  ||||||||||||| |||||||||||||||||||||||    
T  43851784 aaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt 43851846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 414 - 577
Target Start/End: Complemental strand, 14198878 - 14198715
Alignment:
Q  414 tggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaactgggacaacacgcgtttggcgaaaagttaggcctttata 513  Q
    ||||||||||||||||||||||||||||| || || |||||||| |||||||| ||||||||||| ||| | || ||||| |||||||| || || ||||    
T  14198878 tggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagttgggtctgtata 14198779  T
Q  514 ttgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggagg 577  Q
    |||| ||||| ||||||||| | || ||||| || || ||||||||||||||||| ||||||||    
T  14198778 ttgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggagg 14198715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 14199215 - 14199113
Alignment:
Q  63 aatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttccatggctgatcttggatggtata 162  Q
    ||||||||||||||||| ||| | || |||||||| ||||||||||||||||||||||||||| ||||||| | | |||||||| | |||||||||||||    
T  14199215 aatgcaaaatggtggtattctgcattccacaatgttactgccatggttggagctggtgttcttagtctcccttatgccatggctcaacttggatggtata 14199116  T
Q  163 ttt 165  Q
    |||    
T  14199115 ttt 14199113  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 34408914 - 34408966
Alignment:
Q  60 aggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttgg 112  Q
    ||||| || ||||||||||||||| ||||||||||| |||| |||||||||||    
T  34408914 aggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg 34408966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 42986823 - 42986774
Alignment:
Q  78 tactcttcttttcacaatgtcactgccatggttggagctggtgttcttgg 127  Q
    |||||| | ||||| |||||||||||||||||||||||||  ||||||||    
T  42986823 tactctgcgtttcataatgtcactgccatggttggagctgcagttcttgg 42986774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 38827453 - 38827416
Alignment:
Q  414 tggcaaatggttgagatgcatgaaatggttcctggaaa 451  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  38827453 tggcaaatggttgagatgcatgaaatagttcccggaaa 38827416  T

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