View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_high_5 (Length: 612)
Name: NF20308_high_5
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 230 - 594
Target Start/End: Original strand, 31950742 - 31951105
Alignment:
| Q |
230 |
attcaagttagaattatgtacataccctcaactacgacaaaaactatcccagaacaaccacatgtcggatcaaaggctacccctgctacaccacaacact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31950742 |
attcaagttagaattatgtacataccctcaactacgacaaaaactatcacagaacaaccacatgtcggatcaaaggctacccctactacaccacaacact |
31950841 |
T |
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| Q |
330 |
tggtagtgagtgcagcttcaaaactcacatatactgaataaaaaggcagctaaaggagcaaaactactccagttnnnnnnnnctaagaggtgttgaagtt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
31950842 |
tggtagtgagtgcagcttcaaaactcacatatactgaacaaaaaggcagctaaaggagcaaaaccactccagtt-gggtgggctaagaggtgttgaagtt |
31950940 |
T |
|
| Q |
430 |
gtaatacttgtcttgggagcaaattccagaccagttccatgtccatgagaaaccgcccatacaataacggtagttggatttaaagcttgcacaacagcca |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| || |||||| |
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| T |
31950941 |
gtaatacttgtcttgggagcaaattccagaccagttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagcttgcgcagcagcca |
31951040 |
T |
|
| Q |
530 |
catacaatgtaccattgcgtatgatgataacatgtccagctataatcccacttggcccacaatct |
594 |
Q |
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| T |
31951041 |
catacaacgtaccgttgtgtgtgatgatagcatctccagatataatcccacttggcccacaatct |
31951105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 250 - 594
Target Start/End: Complemental strand, 31951838 - 31951495
Alignment:
| Q |
250 |
cataccctcaactacgacaaaaactatcccagaacaaccacatgtcggatcaaaggctacccctgctacaccacaacacttggtagtgagtgcagcttca |
349 |
Q |
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||||||||||||||||| || ||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||| | ||| ||||| |
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| T |
31951838 |
cataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttca |
31951739 |
T |
|
| Q |
350 |
aaactcacatatactgaataaaaaggcagctaaaggagcaaaactactccagttnnnnnnnnctaagaggtgttgaagttgtaatacttgtcttgggagc |
449 |
Q |
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||||||||||| ||||| |||| |||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||| |
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| T |
31951738 |
gaactcacatatgctgaacaaaatggcagctaaaggagcaaaaccactctagttgggtggg-ctaagaggtgctgaagttgtaatacttgtcttgggaga |
31951640 |
T |
|
| Q |
450 |
aaattccagaccagttccatgtccatgagaaaccgcccatacaataacggtagttggatttaaagcttgcacaacagccacatacaatgtaccattgcgt |
549 |
Q |
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| T |
31951639 |
aaattccagaccatttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccacatgcaatgtaccattgtct |
31951540 |
T |
|
| Q |
550 |
atgatgataacatgtccagctataatcccacttggcccacaatct |
594 |
Q |
| |
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|||||||| ||| |||||||||||| |||||||||||||||||| |
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| T |
31951539 |
gtgatgatagcatctccagctataattccacttggcccacaatct |
31951495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 31950522 - 31950671
Alignment:
| Q |
9 |
gaagaatatgcatattaaaggaatatatcatattgccaatgaaaaatcacatgtttagatataaatgtttaaaaaatttgaacagcttaacacaatatgt |
108 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950522 |
gaagaaaatgaatattaaaggaatatatcatattgccaatgaaaaatcacatgtttagatataaatgtttaaaaaatttgaacagcttaacacaatatgt |
31950621 |
T |
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| Q |
109 |
aggtaaaataaagcttcacagatcttagtgtcgttcaattggaatcagtt |
158 |
Q |
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| T |
31950622 |
aggtaaaataaagcttcacagatcttagtgtcgttcaattggaatcagtt |
31950671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 31952066 - 31951927
Alignment:
| Q |
16 |
atgcatattaaaggaatatatcatattgccaatgaaaaatcacatgtttagatataaatgtttaaaaaatttgaacagcttaacacaatatgtaggtaaa |
115 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
31952066 |
atgcatattaaaaaaatatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaacaaatttgaacagcttaacacaatatgtgggtaaa |
31951967 |
T |
|
| Q |
116 |
ataaagcttcacagatcttagtgtcgttcaattggaatca |
155 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
31951966 |
ataaggcttcatagatcttagtgtcgttcaattggaatca |
31951927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 3498012 - 3498157
Alignment:
| Q |
11 |
agaatatgcatattaaaggaatatatcatattgccaatgaaaaatcacatgtttagatataaatgtttaaaaaatttgaacagcttaacacaatatgtag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| |||||||| ||||||||||||| | |
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| T |
3498012 |
agaaaatgcatattaaaggaatatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaaaaaacttgaacagtttaacacaatatg--g |
3498109 |
T |
|
| Q |
111 |
gtaaaataaagcttcacagatcttagtgtcgttcaattggaatcagtt |
158 |
Q |
| |
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||||||||| |||||||||||||||||| | |||||||| ||| |||| |
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| T |
3498110 |
gtaaaataaggcttcacagatcttagtgccattcaattgtaattagtt |
3498157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 367
Target Start/End: Original strand, 3498224 - 3498361
Alignment:
| Q |
230 |
attcaagttagaattatgtacataccctcaactacgacaaaaactatcccagaacaaccacatgtcggatcaaaggctacccctgctacaccacaacact |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| | ||||| |||||| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
3498224 |
attcaagttagaattatgtacataccctcaactacaacagcagctatcacagaaccaccacgcgttggatcaaaggctacccctgctacaccacaacact |
3498323 |
T |
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| Q |
330 |
tggtagtgagtgcagcttcaaaactcacatatactgaa |
367 |
Q |
| |
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||||| | ||||||||||| ||||||||||| ||||| |
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| T |
3498324 |
gggtagagggtgcagcttcagaactcacatatgctgaa |
3498361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 362 - 590
Target Start/End: Original strand, 3498409 - 3498636
Alignment:
| Q |
362 |
actgaataaaaaggcagctaaaggagcaaaactactccagttnnnnnnnnctaagaggtgttgaagttgtaatacttgtcttgggagcaaattccagacc |
461 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||| | ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
3498409 |
actgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtggg-ctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagacc |
3498507 |
T |
|
| Q |
462 |
agttccatgtccatgagaaaccgcccatacaataacggtagttggatttaaagcttgcacaacagccacatacaatgtaccattgcgtatgatgataaca |
561 |
Q |
| |
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| |||| |||||| | ||||| ||||||| |||||||||| |||| | |||||| ||||| | ||||| | || ||||| || | |||||||| || |
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| T |
3498508 |
atttccctgtccaggcaaaaccacccatactataacggtagctggactaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagca |
3498607 |
T |
|
| Q |
562 |
tgtccagctataatcccacttggcccaca |
590 |
Q |
| |
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| ||||||||||||||||||||||||| |
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| T |
3498608 |
tcagcagctataatcccacttggcccaca |
3498636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 2354642 - 2354685
Alignment:
| Q |
551 |
tgatgataacatgtccagctataatcccacttggcccacaatct |
594 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
2354642 |
tgatgatagcatctccagctataatcccacttggcccacaatct |
2354685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 22927492 - 22927431
Alignment:
| Q |
89 |
aacagcttaacacaatatgtaggtaaaataaagcttcacagatcttagtgtcgttcaattggaa |
152 |
Q |
| |
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||||| ||||||||| ||| |||||||||| |||||| |||||||| |||| ||||||||||| |
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|
| T |
22927492 |
aacagattaacacaaaatg--ggtaaaataaggcttcatagatcttaatgtcattcaattggaa |
22927431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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