View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_10 (Length: 515)
Name: NF20308_low_10
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Complemental strand, 3645546 - 3645060
Alignment:
| Q |
11 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3645546 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagactagtaaggtaacaacagtggcaccagcaat |
3645447 |
T |
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| Q |
111 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaatnnnnnnntgaagggttttacttcaataaagccaaattcatagcacgaagg |
210 |
Q |
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| T |
3645446 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaataaaaaaatgaagggttttacttcaataaagccaaattcatagcacgaagg |
3645347 |
T |
|
| Q |
211 |
tattattttaagcgatttcaaacaactaaagacacatatataactacannnnnnnnatcttaaaattttgtccatatctcactatttatattgtaaatga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3645346 |
tattattttaagcgatttcaaacaactaaagacacatata--actacattttttttatcttaaaattttgtccatatctcactatttatattgtaaacga |
3645249 |
T |
|
| Q |
311 |
caagaatctaagcatatgtgatgattaacataacaattgtcttatttgaacatcagaacactgacgctgtatgtgacactatatatgtttatttctctgt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645248 |
caagaatctaagcatatgtgatgattaacataacaattgtgttatttgaacatcagatcactgacgctgtatgtgacactatatatgtttatttctctgt |
3645149 |
T |
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| Q |
411 |
ttacttttttatcttctacggttacaccaaaaacagacataaaacccaaattatacagtacatgacatcaaaattttggatgtctgtat |
499 |
Q |
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| T |
3645148 |
ttacttttttatcttctacggttacaccaaaaacagacataaaacccaaattatacagtacatgacatcaaaactttggatgtctgtat |
3645060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 3636294 - 3636145
Alignment:
| Q |
11 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaat |
110 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3636294 |
cacagatattgattatcaccacaagtaataagaaaactgtgaaatttgtaaacttcaaagatgagtagacaagtaaggtaactacagtggcaccagcaat |
3636195 |
T |
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| Q |
111 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaat |
160 |
Q |
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|||||||||||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
3636194 |
aataaaagacagattttgtgtcaccagccacaattgcaatacctgccaat |
3636145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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