View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_11 (Length: 496)
Name: NF20308_low_11
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 39093148 - 39093620
Alignment:
| Q |
16 |
ttaatattaccaaaaattttaatgtttccctcattgtcccatttttgttgaaaattctcnnnnnnntaaatattcactccctccttcattttcattcttc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39093148 |
ttaatattaccaaaaattttaatgtttccctcattgtcccatttttgttgaaaattctcaaaaaaataaatattcactccctccttcattttcattcttc |
39093247 |
T |
|
| Q |
116 |
cctctcaaacacactccaaaaagtaaaaacattttcacatcaaccatgtttaaataccccaattcacaacaccttcttccatctcaaattgaattcctct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093248 |
cctctcaaacacactccaaaaagtaaaaacattttcacatcaaccatgtttaaataccccaattcacaacaccttcttccatctcaaattgaattcctct |
39093347 |
T |
|
| Q |
216 |
ttcttttctccgaaaatcttatcgtgttgctgagattcttattcaacgatgtccattggagacaacaaagaaaacattcctccagtttataccaatgggg |
315 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093348 |
ttcttttctccgaaaatctcatcgtgttgctgagattcttattcaacgatgtccattggagacaacaaagaaaacattcctccagtttataccaatgggg |
39093447 |
T |
|
| Q |
316 |
aaaataagaagaagaattcaatttctatcatggcctcatctttcaagaagaatagtagtaaaagaaagatgaagagggtccctcttgctgatatcaccaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093448 |
aaaataagaagaagaattcaatttctatcatggcctcatctttcaagaagaatagtagtaaaagaaagatgaagagggtccctcttgctgatatcaccaa |
39093547 |
T |
|
| Q |
416 |
tttgtttgagaactcttccacattaacaacgaccagagaagaaaatgttctttcttctgcgtcggttcatctc |
488 |
Q |
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| T |
39093548 |
tttgtttgagaactcttccacattaacaacgaccagagaagaaaatgttttttcttctgcgtcggttcatctc |
39093620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 463
Target Start/End: Original strand, 39231953 - 39232056
Alignment:
| Q |
360 |
aagaagaatagtagtaaaagaaagatgaagagggtccctcttgctgatatcaccaatttgtttgagaactcttccacattaacaacgaccagagaagaaa |
459 |
Q |
| |
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||||||||||||| | ||||||||||||||||| ||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
39231953 |
aagaagaatagtactgaaagaaagatgaagaggagccctcttgcagatatcacccatttgttcgacaactcttccacattaacaacgaccagagaagaac |
39232052 |
T |
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| Q |
460 |
atgt |
463 |
Q |
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|||| |
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| T |
39232053 |
atgt |
39232056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 39231835 - 39231885
Alignment:
| Q |
195 |
catctcaaattgaattcctctttcttttctccgaaaatcttatcgtgttgc |
245 |
Q |
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| T |
39231835 |
catctcaaattgaattcctcattcttttctccgaaaatctcatcttgttgc |
39231885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 39231795 - 39231838
Alignment:
| Q |
113 |
ttccctctcaaacacactccaaaaagtaaaaacattttcacatc |
156 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| |
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| T |
39231795 |
ttccctctcaaacacattcgaaaaagtaaaaacattttcacatc |
39231838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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