View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20308_low_14 (Length: 449)
Name: NF20308_low_14
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 78 - 436
Target Start/End: Complemental strand, 31919743 - 31919382
Alignment:
| Q |
78 |
gatttctccttgtgcggcttagccttaggggtgagaatatgttagattagcttacagagccctaggtttaagctttttcaaatatctttttaattaaata |
177 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31919743 |
gatttctccttgtgcggcttaaccctaggggtgagaatatgttagattggcttacagagccctaggtttaagctttttcaaatgtctttttaatcaaata |
31919644 |
T |
|
| Q |
178 |
ggtcatgcttagacacataaatcaacctattaagcctgatatatcaatctatttaataaataagtattatttttgtagaacctacttatttatataataa |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31919643 |
ggtcatgcttagacacataaatcaacctattaagcctgatatatcaatctatttaataaataagtattatttttgtagaacctacttatttatataataa |
31919544 |
T |
|
| Q |
278 |
acactcatctcaaaattagaagttgtgttttagcattgaacacctttttatttagac--aaaacccctacttttctttttgaaaataagtcattttgaag |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
31919543 |
acactcatctcaaaattagaagttgtgttttagcattgaacacctttttatttagacaaaaaacccttacttttctttttaaaaataagtcattttgaag |
31919444 |
T |
|
| Q |
376 |
ggcaagcttgtcatttgacatttaaatttatta-tttaataaatgctttaatcaagctcttc |
436 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31919443 |
ggcaagcttgtaatttgacatttaaatttattattttaataaatgctttaatcaagctcttc |
31919382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 31919788 - 31919733
Alignment:
| Q |
7 |
atgaccccatataatttgaaggtgggataaaccataagatcacaagatttctcctt |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31919788 |
atgaccccatataatttgaaggtgggataaaccatatgatcacaagatttctcctt |
31919733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 49579737 - 49579656
Alignment:
| Q |
301 |
tgtgttttagcattgaacacctttttatttagacaaa--acccctacttttctttttgaaaataagtcattttgaagggcaa |
380 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||| |||| |
|
|
| T |
49579737 |
tgtgttttagcatacaacacctttttatttagacaaaacaccccatcttttctttctaaaaataagtcaaattgaagagcaa |
49579656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 49579071 - 49579150
Alignment:
| Q |
301 |
tgtgttttagcattgaacacctttttatttagacaaa--acccctacttttctttttgaaaataagtcattttgaagggc |
378 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||| ||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
49579071 |
tgtgttttagcaaacaacacctttttatttggacaaaacaccccaactttcctttttgaaaacaagtcaagttgaagggc |
49579150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 197284 - 197235
Alignment:
| Q |
289 |
aaaattagaagttgtgttttagcattgaacacctttttatttagacaaaa |
338 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
197284 |
aaaaatagaaggtgtgttttagcattgaacaccttttgatttagagaaaa |
197235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 196587 - 196648
Alignment:
| Q |
301 |
tgtgttttagcattgaacacctttttatttagac--aaaacccctacttttctttttgaaaa |
360 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||| ||||| || ||||||||||||||||| |
|
|
| T |
196587 |
tgtggtttagcattgaacaccttttgatttggacaaaaaactccaacttttctttttgaaaa |
196648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 1297263 - 1297307
Alignment:
| Q |
296 |
gaagttgtgttttagcattgaacacctt-tttatttagacaaaac |
339 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1297263 |
gaaggtgtgttttagcattgaacaccttctttatttggacaaaac |
1297307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University