View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_low_15 (Length: 439)

Name: NF20308_low_15
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_low_15
NF20308_low_15
[»] chr7 (13 HSPs)
chr7 (20-430)||(1781168-1781578)
chr7 (139-395)||(8859429-8859685)
chr7 (139-395)||(8875832-8876087)
chr7 (217-380)||(8858823-8858986)
chr7 (220-380)||(2478577-2478736)
chr7 (211-286)||(12866135-12866210)
chr7 (218-311)||(23103149-23103242)
chr7 (218-286)||(19856882-19856950)
chr7 (200-280)||(16803168-16803245)
chr7 (237-340)||(7228084-7228188)
chr7 (218-270)||(25992368-25992420)
chr7 (209-311)||(983732-983834)
chr7 (218-307)||(26573258-26573346)
[»] chr1 (11 HSPs)
chr1 (209-380)||(15243817-15243988)
chr1 (197-394)||(19705385-19705581)
chr1 (75-283)||(19708234-19708442)
chr1 (203-288)||(23412488-23412573)
chr1 (87-160)||(19707013-19707086)
chr1 (291-379)||(4857231-4857319)
chr1 (199-278)||(15877312-15877391)
chr1 (209-295)||(1971643-1971729)
chr1 (218-278)||(26780917-26780977)
chr1 (199-310)||(33078338-33078449)
chr1 (237-331)||(47900733-47900827)
[»] chr8 (3 HSPs)
chr8 (244-394)||(7634596-7634746)
chr8 (262-382)||(29452866-29452986)
chr8 (207-339)||(30122889-30123021)
[»] chr5 (4 HSPs)
chr5 (211-379)||(15608257-15608425)
chr5 (210-378)||(17468371-17468538)
chr5 (218-310)||(27892864-27892955)
chr5 (201-264)||(43582570-43582633)
[»] chr2 (2 HSPs)
chr2 (199-339)||(17558802-17558942)
chr2 (209-288)||(27467827-27467906)
[»] chr4 (6 HSPs)
chr4 (209-311)||(7355366-7355468)
chr4 (207-321)||(10178877-10178991)
chr4 (237-288)||(37239435-37239486)
chr4 (218-279)||(51461088-51461149)
chr4 (239-322)||(19943500-19943583)
chr4 (218-269)||(22271136-22271187)
[»] scaffold0037 (1 HSPs)
scaffold0037 (203-286)||(107643-107726)
[»] chr3 (2 HSPs)
chr3 (239-331)||(48559383-48559475)
chr3 (219-270)||(4288228-4288279)
[»] chr6 (1 HSPs)
chr6 (231-286)||(14274251-14274306)
[»] scaffold0004 (1 HSPs)
scaffold0004 (203-272)||(119124-119193)


Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 1781168 - 1781578
Alignment:
Q  20 gctaactcatagaacatagatcttaagcaatgataagcaatggtcccttgggttcgtactattgtacgaccatcctagatgatctgtcgcgttataactc 119  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1781168 gctaactcatagaacatagctcttaagcaatgataagcaatagtcccttgggttcgtactattgtacgaccatcctagatgatctgtcgcgctataactc 1781267  T
Q  120 tttgcatattctaacgttgtatcttcatacatcgccaaacttgttttatatgttgtagctgcatatatctccaataaatttcctcatcatgttccataaa 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1781268 tttgcatattctaacattgtatcttcatacatcgccaaacttgttttatatgttgtagctgcatatatctccaatacatttcctcatcatgttccataaa 1781367  T
Q  220 acatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1781368 acatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggc 1781467  T
Q  320 cattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaaaatgaccggttatcatatatgcatcagtgacataaagaaa 419  Q
    |||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1781468 cattcaatcacttaatttcttatcgattatgggggataagtgcaatataataacctacaaaacgaccggttatcatatatgcatcagtgacataaagaaa 1781567  T
Q  420 atcagaataat 430  Q
    |||||||||||    
T  1781568 atcagaataat 1781578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 395
Target Start/End: Original strand, 8859429 - 8859685
Alignment:
Q  139 tatcttcatacatcgccaaacttgttttatatgttgtagctgcatatatctccaataaatttcctcatcatgttccataaaacatccataataagcaata 238  Q
    ||||||||||| || ||| |||| ||||  |||||||| || | |||||||| | |  | ||||||||| ||||||  ||||||||||||| || || ||    
T  8859429 tatcttcatacttccccatacttcttttccatgttgtatcttcttatatctcaagtgcaattcctcatcctgttccgcaaaacatccataacaaacatta 8859528  T
Q  239 ctagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcattcaatcacttaatttc 338  Q
    |||||| |||| ||||||| |||||||||||||||||||||| |||||||  ||| | ||| ||||||||||| |||| ||||| |||| ||| ||||||    
T  8859529 ctagttgaaaacgattaaataacactaaaaactacttaaaacaataaattcctaagtagtctctgattagatgctatatgtcatgcaataactcaatttc 8859628  T
Q  339 ttatcgattatggaggataaatgtaatataataacctacaaaatgaccggttatcat 395  Q
    | ||  ||||||| | |||| || |||||||||||||||||||| || |||||||||    
T  8859629 tcatatattatggggaataagtgcaatataataacctacaaaattacgggttatcat 8859685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 139 - 395
Target Start/End: Complemental strand, 8876087 - 8875832
Alignment:
Q  139 tatcttcatacatcgccaaacttgttttatatgttgtagctgcatatatctccaataaatttcctcatcatgttccataaaacatccataataagcaata 238  Q
    ||||||||||| || ||| |||| ||||  |||||||| || | |||||||| |||  | ||||||||| |||||   ||||||||||||| || || ||    
T  8876087 tatcttcatacttccccatacttcttttccatgttgtatcttcttatatctcaaatgcaattcctcatcctgttctgcaaaacatccataacaaacatta 8875988  T
Q  239 ctagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcattcaatcacttaatttc 338  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| |||||||  ||| | |||  |||||||||| |||| ||||| |||| ||| ||||||    
T  8875987 ctagttcaaaacgattaaataacact-aaaactacttaaaacaataaattcctaagtagtctatgattagatgctataagtcatgcaataactcaatttc 8875889  T
Q  339 ttatcgattatggaggataaatgtaatataataacctacaaaatgaccggttatcat 395  Q
    | ||  ||||||| | |||| || ||| |||||||||||||||| ||  ||||||||    
T  8875888 tcatatattatggggaataagtgcaatgtaataacctacaaaattacgagttatcat 8875832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 380
Target Start/End: Complemental strand, 8858986 - 8858823
Alignment:
Q  217 aaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttata 316  Q
    ||||||||||||| || || || |  ||||||||||||||| |||||||||||||||||||||| ||||||| |||||| ||| ||||||||||| ||||    
T  8858986 aaaacatccataacaaacattattgattcaaaatgattaaataacactaaaaactacttaaaacaataaattcataaatagtctctgattagatgctata 8858887  T
Q  317 ggtcattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaaa 380  Q
     ||||| |||| ||| ||||||| || ||||| || |||||| || ||| || |||||||||||    
T  8858886 tgtcatgcaataactcaatttctcatagattacgggggataagtgcaatgtactaacctacaaa 8858823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 220 - 380
Target Start/End: Original strand, 2478577 - 2478736
Alignment:
Q  220 acatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggt 319  Q
    |||||||  ||||||| ||||| |||||| |||| |||  ||||||||||||| |||||||||||||||  ||||| ||||||||||||||||| |||||    
T  2478577 acatccaagataagcattactatttcaaa-tgatcaaactacactaaaaactaattaaaaccataaattcctaaatagtcactgattagatgttttaggt 2478675  T
Q  320 cattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaaa 380  Q
    ||| || |||||||||||||| |  ||||||| |||||| || || || ||||||| ||||    
T  2478676 catgcattcacttaatttcttgttcattatgggggataagtgcaacatgataaccttcaaa 2478736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 12866135 - 12866210
Alignment:
Q  211 ttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaa 286  Q
    |||||| |||||||||  |||| || ||||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  12866135 ttccatcaaacatccaacataaacattactagttcaaaatgatcaaataacactaaaaactaattaaaaccataaa 12866210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 23103242 - 23103149
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatg 311  Q
    ||||||||| || ||||| |||||||||||||||| |||  |||||||||||||| ||||||| ||||| |  ||||| | |||| ||||||||    
T  23103242 aaacatccacaacaagcattactagttcaaaatgaataattaacactaaaaactaattaaaactataaaatcctaaataggcactaattagatg 23103149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 19856882 - 19856950
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaa 286  Q
    ||||||||| || |||||  |||||||||||||||||||  |||||||||||| ||||||||| |||||    
T  19856882 aaacatccacaacaagcatcactagttcaaaatgattaattaacactaaaaacaacttaaaactataaa 19856950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 16803245 - 16803168
Alignment:
Q  200 tcctcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaac 280  Q
    ||||||||||||| ||| ||||||||| || ||||| ||   ||||||||| |||||| |||||||||||||| |||||||    
T  16803245 tcctcatcatgtttcatcaaacatccacaacaagcatta---gttcaaaattattaaataacactaaaaactaattaaaac 16803168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 7228188 - 7228084
Alignment:
Q  237 tactagttcaaaatgattaaagaacactaaaaactacttaaaaccat-aaattaataaatggtcactgattagatgttataggtcattcaatcacttaat 335  Q
    ||||||||||||| ||||||  ||||||||| |||||||||||| || ||| |  ||||| | |||||||||||| |  ||||  ||||||||||| |||    
T  7228188 tactagttcaaaaagattaattaacactaaacactacttaaaactataaaaattctaaataggcactgattagatctcttaggcaattcaatcactcaat 7228089  T
Q  336 ttctt 340  Q
    |||||    
T  7228088 ttctt 7228084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 25992368 - 25992420
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaac 270  Q
    |||||||||| | ||||| ||||| ||||||||||||||| ||||||||||||    
T  25992368 aaacatccatgacaagcattactaattcaaaatgattaaataacactaaaaac 25992420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 983834 - 983732
Alignment:
Q  209 tgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattag 308  Q
    |||||||| ||||||  | || |||||  ||||||| |||||||| |||  ||||| ||||||| ||||||||||||| |  ||||| | ||||||||||    
T  983834 tgttccatcaaacataaaaaacaagcatcactagtttaaaatgatcaaactacacttaaaactaattaaaaccataaaatcctaaatagacactgattag 983735  T
Q  309 atg 311  Q
    |||    
T  983734 atg 983732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 307
Target Start/End: Original strand, 26573258 - 26573346
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgatta 307  Q
    ||||||||| || |||||  |||||||||||||||| |||  |||||||||| || |||||| ||||||  | ||||| |||||||||||    
T  26573258 aaacatccaaaacaagcataactagttcaaaatgatcaaactacactaaaaaataattaaaa-cataaaaaactaaatagtcactgatta 26573346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 15243988 - 15243817
Alignment:
Q  209 tgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattag 308  Q
    |||||||| || |||||| || ||||| ||||||||||||||||| ||| ||||||||||| || |||||||||||||||  ||||| ||||||||||||    
T  15243988 tgttccatcaatcatccaaaacaagcattactagttcaaaatgatcaaataacactaaaaattaattaaaaccataaattcctaaatagtcactgattag 15243889  T
Q  309 atgttataggtcattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaaa 380  Q
    ||||| |||||||| || ||||| |||||||| |  ||||||| |||||| ||||| || ||||||||||||    
T  15243888 atgttttaggtcatgcattcactcaatttcttgttcattatgggggataagtgtaacatgataacctacaaa 15243817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 394
Target Start/End: Complemental strand, 19705581 - 19705385
Alignment:
Q  197 atttcctcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatg 296  Q
    ||||||||||| ||||||| ||| | | || || ||||| ||||||||||||||||||||| ||||||||||  |||| | ||||||||| |  |||||     
T  19705581 atttcctcatcttgttccacaaa-cgttcacaacaagcattactagttcaaaatgattaaataacactaaaagttactcacaaccataaactcctaaata 19705483  T
Q  297 gtcactgattagatgttataggtcattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaaaatgaccggttatca 394  Q
    ||||||||||| |||||||||| ||| ||  |||| ||||||| || | |||||| |||||| || || || |||||||||||| ||  |||||||||    
T  19705482 gtcactgattatatgttataggccatgcatacactcaatttctcataggttatgggggataagtgcaaaatgataacctacaaattgttcggttatca 19705385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 283
Target Start/End: Complemental strand, 19708442 - 19708234
Alignment:
Q  75 gtactattgtacgaccatcctagatgatctgtcgcgttataactctttgcatattctaacgttgtatcttcatacatcgccaaacttgttttatatgttg 174  Q
    |||| |||||| ||||||||| || ||||||  | |||||| |||  ||||| ||||||||||||||||||| ||||||| | |||| |||   |  |||    
T  19708442 gtacaattgtatgaccatcctggacgatctgcagtgttatatctccatgcatcttctaacgttgtatcttca-acatcgcaagacttctttcccacattg 19708344  T
Q  175 tagctgcatatatctccaataaatttcctcatcatgttccataaaa-catccataataagcaatactagttcaaaatgattaaagaacactaaaaactac 273  Q
    ||  ||| || ||||| | | |||||||||||  |||||||||||| |||| | || ||||| ||||||||||||||||||| | || ||||||| ||||    
T  19708343 tatatgcttagatctctagtgaatttcctcatattgttccataaaaacatctacaacaagcattactagttcaaaatgattatataaaactaaaagctac 19708244  T
Q  274 ttaaaaccat 283  Q
    | ||||||||    
T  19708243 tcaaaaccat 19708234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 23412488 - 23412573
Alignment:
Q  203 tcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaatt 288  Q
    ||||||||||||| |||||||| |||| || || ||||||||||||||||||||| ||||||||||| ||  ||||| ||||||||    
T  23412488 tcatcatgttccacaaaacatctataacaaccattactagttcaaaatgattaaataacactaaaaattatataaaatcataaatt 23412573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 19707086 - 19707013
Alignment:
Q  87 gaccatcctagatgatctgtcgcgttataactctttgcatattctaacgttgtatcttcatacatcgccaaact 160  Q
    ||||||||| || ||| ||| | |||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  19707086 gaccatcctggacgatttgtagtgttatatctccttgcatattctaacgttgtatcttcatacatctccaaact 19707013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 4857231 - 4857319
Alignment:
Q  291 taaatggtcactgattagatgttataggtcattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaa 379  Q
    ||||| |||||| ||||||||||||||||||| |||||| ||||||| | || || ||| ||||||||||||||  |||||||| ||||    
T  4857231 taaatagtcactaattagatgttataggtcatacaatcagttaatttatcatagaatatagaggataaatgtaaagtaataaccaacaa 4857319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 15877391 - 15877312
Alignment:
Q  199 ttcctcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaa 278  Q
    |||||||||||||   || ||||||||| || || || ||||||||||||||||||||  ||||||||||||||||||||    
T  15877391 ttcctcatcatgtataatcaaacatccacaacaatcattactagttcaaaatgattaattaacactaaaaactacttaaa 15877312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 1971729 - 1971643
Alignment:
Q  209 tgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaat 295  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||| |||  ||||||||||||| |||||| ||||||||| ||||||    
T  1971729 tgttccacaaaacatccacaacgagcattacaagttcaaaatgactaactaacactaaaaactgcttaaacccataaattcataaat 1971643  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 26780917 - 26780977
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaa 278  Q
    |||||||||  | ||||| ||||||||||||||||||||  |||||||||||| |||||||    
T  26780917 aaacatccaggacaagcattactagttcaaaatgattaattaacactaaaaacaacttaaa 26780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 33078449 - 33078338
Alignment:
Q  199 ttcctcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggt 298  Q
    ||||||||| |||  ||| |||||| || || |||||  | ||||||||||||| |||  |||||||||||||| |||||||  |||| |  ||||| ||    
T  33078449 ttcctcatcttgtatcatcaaacattcaaaacaagcatcattagttcaaaatgagtaattaacactaaaaactaattaaaactctaaaatcctaaatagt 33078350  T
Q  299 cactgattagat 310  Q
    ||||||||||||    
T  33078349 cactgattagat 33078338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 47900733 - 47900827
Alignment:
Q  237 tactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcattcaatcact 331  Q
    ||||| || |||||||| |||  ||||||||||||| ||||||| |||||||  ||||| |||  |||||||||||| ||| |||| || |||||    
T  47900733 tactaatttaaaatgatcaaactacactaaaaactaattaaaacaataaattcctaaatagtcggtgattagatgttttagttcatgcattcact 47900827  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 244 - 394
Target Start/End: Complemental strand, 7634746 - 7634596
Alignment:
Q  244 tcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcattcaatcacttaatttcttatc 343  Q
    |||||||||||||| || |||||||||||||||||||||||||||  |||||  ||||| |||||| | | |||| ||| |||||||| ||||||||||     
T  7634746 tcaaaatgattaaataatactaaaaactacttaaaaccataaattcctaaataatcactaattagaaggtttaggccatgcaatcactcaatttcttata 7634647  T
Q  344 gattatggaggataaatgtaatataataacctacaaaatgaccggttatca 394  Q
    |||||||| |||||| |||| | ||||||||||||||||  ||||||||||    
T  7634646 gattatgggggataagtgtagtgtaataacctacaaaattgccggttatca 7634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 262 - 382
Target Start/End: Complemental strand, 29452986 - 29452866
Alignment:
Q  262 actaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcattcaatcacttaatttcttatcgattatggaggataaatg 361  Q
    ||||||||||| |||||| ||||||||  ||||| |||||| |||| |||| ||||  ||| |||| ||| ||||||| ||  ||| ||| |||||||||    
T  29452986 actaaaaactaattaaaatcataaatttttaaatagtcactaattatatgtcatagaccatgcaattactcaatttctaataaattttgggggataaatg 29452887  T
Q  362 taatataataacctacaaaat 382  Q
     ||||||||||||||||||||    
T  29452886 caatataataacctacaaaat 29452866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 339
Target Start/End: Original strand, 30122889 - 30123021
Alignment:
Q  207 catgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgatt 306  Q
    |||||||||| ||||||||| || ||  | ||||||||||||||||  | | |||||||||||||| ||||||| ||||| |  |||||   |||| |||    
T  30122889 catgttccatcaaacatccaaaacaaaaattactagttcaaaatgaccacataacactaaaaactaattaaaactataaaatcctaaatatgcactaatt 30122988  T
Q  307 agatgttataggtcattcaatcacttaatttct 339  Q
    ||||||| |||| ||| || | |||||||||||    
T  30122989 agatgttttaggccatacatttacttaatttct 30123021  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 211 - 379
Target Start/End: Original strand, 15608257 - 15608425
Alignment:
Q  211 ttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagat 310  Q
    |||||||||||| | | ||  |||| ||||| ||||||| ||||||| |||||||||| ||| |||||| ||||||||  ||||| |||| | |||||||    
T  15608257 ttccataaaacaacaaaaacgagcattactacttcaaaaagattaaataacactaaaagctatttaaaatcataaattcctaaatagtcaattattagat 15608356  T
Q  311 gttataggtcattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctacaa 379  Q
    | || | ||||| |||||||| ||||||| || |||||| |||||||| || |||||||||||||||||    
T  15608357 gctacatgtcatgcaatcactcaatttctcatagattatagaggataagtgcaatataataacctacaa 15608425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 210 - 378
Target Start/End: Complemental strand, 17468538 - 17468371
Alignment:
Q  210 gttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattaga 309  Q
    ||||||| ||||||||| || ||||| | |||||||||||||||||||  |||||||||| || |||||||  ||||||  ||||| |||||||||||||    
T  17468538 gttccattaaacatccaaaacaagcattgctagttcaaaatgattaaactacactaaaaa-taattaaaactgtaaattcctaaatagtcactgattaga 17468440  T
Q  310 tgttataggtcattcaatcacttaatttcttatcgattatggaggataaatgtaatataataacctaca 378  Q
    || | || | ||  || ||||| ||||||||||  ||||||| |||||| ||||| || |||| |||||    
T  17468439 tgctttatgccacgcattcactcaatttcttattcattatgggggataagtgtaacatgataaactaca 17468371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 310
Target Start/End: Complemental strand, 27892955 - 27892864
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagat 310  Q
    |||||| || || ||||| |||||||||||||||||| || |||||||||||| ||||||| | ||||| || ||||| | |||| |||||||    
T  27892955 aaacatacacaacaagcattactagttcaaaatgatt-aataacactaaaaacaacttaaatctataaaatactaaatagacacttattagat 27892864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 43582570 - 43582633
Alignment:
Q  201 cctcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacact 264  Q
    |||||||||||| ||| || |||||| || | ||| ||||||||||||||||||||| ||||||    
T  43582570 cctcatcatgtttcatcaagcatccacaacacgcattactagttcaaaatgattaaataacact 43582633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 17558802 - 17558942
Alignment:
Q  199 ttcctcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggt 298  Q
    ||||||| | |||||| | |||||| || || | ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||| ||    
T  17558802 ttcctcaccttgttccttcaaacattcaaaacatgcattactagtttaaaatgattaattaacactaaaaactacttaaaaccataaattcataaatagt 17558901  T
Q  299 cactgattagatgttataggtcattcaatcacttaatttct 339  Q
    ||||||||||||||| |||| ||| || | ||| |||||||    
T  17558902 cactgattagatgttttaggccatgcattaactcaatttct 17558942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 27467827 - 27467906
Alignment:
Q  209 tgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaatt 288  Q
    |||||||| ||||||||| || ||||| || ||||||||| |||| |||  ||||||||| | | |||||||||||||||    
T  27467827 tgttccatcaaacatccaaaacaagcattattagttcaaagtgatcaaactacactaaaagccaattaaaaccataaatt 27467906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 7355366 - 7355468
Alignment:
Q  209 tgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattag 308  Q
    |||||||| ||||||||| | |||||| || |||||||||||||| ||| ||||||||||| || ||||||||||||||| |||||| ||||||||||||    
T  7355366 tgttccatcaaacatccaaactaagcattattagttcaaaatgatcaaataacactaaaaattaattaaaaccataaatttataaatagtcactgattag 7355465  T
Q  309 atg 311  Q
    |||    
T  7355466 atg 7355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 10178991 - 10178877
Alignment:
Q  207 catgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgatt 306  Q
    |||||||||| ||||||||| || ||| | ||||||||||||||||||||| ||||||||||| || ||||||| ||||| |  ||||||| ||||||||    
T  10178991 catgttccatcaaacatccaaaacaagtattactagttcaaaatgattaaataacactaaaaattaattaaaactataaaatcctaaatggacactgatt 10178892  T
Q  307 agatgttataggtca 321  Q
    | ||| | |||||||    
T  10178891 aaatgatttaggtca 10178877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 37239435 - 37239486
Alignment:
Q  237 tactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaatt 288  Q
    ||||||||||||||||||||| |||| |||||| || |||||||||||||||    
T  37239435 tactagttcaaaatgattaaataacattaaaaattagttaaaaccataaatt 37239486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 51461149 - 51461088
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaa 279  Q
    ||||||||| || ||||| || |||||||||||||||||  |||||||||||| ||||||||    
T  51461149 aaacatccacaacaagcattaatagttcaaaatgattaattaacactaaaaacaacttaaaa 51461088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 19943500 - 19943583
Alignment:
Q  239 ctagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcat 322  Q
    ||||||||||||||||||| |||| ||||||||| | |||||  |||| |  ||||| | ||||||||| ||||| ||||||||    
T  19943500 ctagttcaaaatgattaaataacaataaaaactaatcaaaactctaaaatcctaaatagacactgattatatgttttaggtcat 19943583  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 22271136 - 22271187
Alignment:
Q  218 aaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaa 269  Q
    |||||||||||| || || || |||||||||||||||||| |||||||||||    
T  22271136 aaacatccataacaaacattattagttcaaaatgattaaataacactaaaaa 22271187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 107726 - 107643
Alignment:
Q  203 tcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaa 286  Q
    |||||||||  ||| |||| |||| || ||||| |||||||||||| |||||||  |||||||||||||| ||||||| |||||    
T  107726 tcatcatgtatcatcaaacttccacaacaagcattactagttcaaattgattaattaacactaaaaactaattaaaactataaa 107643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 48559383 - 48559475
Alignment:
Q  239 ctagttcaaaatgattaaagaacactaaaaactacttaaaaccataaattaataaatggtcactgattagatgttataggtcattcaatcact 331  Q
    |||||||||||||||||||  || |||||||||| |||||||  |||| |  ||||| | |||| |||||||||| |||||||| || |||||    
T  48559383 ctagttcaaaatgattaaactactctaaaaactaattaaaactctaaaatcttaaataggcactaattagatgttttaggtcatacattcact 48559475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 4288228 - 4288279
Alignment:
Q  219 aacatccataataagcaatactagttcaaaatgattaaagaacactaaaaac 270  Q
    ||||||||||| || || ||||||||||||||||||||  ||||||||||||    
T  4288228 aacatccataacaaacattactagttcaaaatgattaattaacactaaaaac 4288279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 14274306 - 14274251
Alignment:
Q  231 aagcaatactagttcaaaatgattaaagaacactaaaaactacttaaaaccataaa 286  Q
    ||||| || ||||||||||||||||||  ||||||||||||| |||||| ||||||    
T  14274306 aagcattattagttcaaaatgattaaactacactaaaaactaattaaaatcataaa 14274251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 119193 - 119124
Alignment:
Q  203 tcatcatgttccataaaacatccataataagcaatactagttcaaaatgattaaagaacactaaaaacta 272  Q
    |||||||||||||||||||| ||| ||  || | |||||||||||||||| |||| |||  |||||||||    
T  119193 tcatcatgttccataaaacaaccaaaacgagaattactagttcaaaatgactaaataactataaaaacta 119124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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