View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_16 (Length: 436)
Name: NF20308_low_16
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 128 - 336
Target Start/End: Original strand, 17790346 - 17790549
Alignment:
| Q |
128 |
aaaaagcgcgaacgtttttgggaaaacccaaaatctaattgcgaagactaagaatgacggcaagtggacgcagtgtaacagtttcttttcaacatatatg |
227 |
Q |
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| T |
17790346 |
aaaaagcacgaacatttttgggaaaacccaaaatctaattgcgaagactaagaatgacgacaaatggatccagtgtaacagttccttttcaacatatatg |
17790445 |
T |
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| Q |
228 |
ctttcatgatacagagaagctgcaggttcaagccctgtgagtcccgatggatacaaatcaaatccagatgttaattaagtttaaagataaaccatttgac |
327 |
Q |
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| T |
17790446 |
ctttcataatacagagaag-----agttcaagccctctgagtcccgatggatacaaatcaaatccagatgttaattaagtttaaagataaaccatttgac |
17790540 |
T |
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| Q |
328 |
gactcaagt |
336 |
Q |
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| T |
17790541 |
gactcaagt |
17790549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 21383759 - 21383726
Alignment:
| Q |
365 |
tttgttaaagagtctcacatcggataaaagatgg |
398 |
Q |
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| T |
21383759 |
tttgttaaggagtctcacatcggataaaagatgg |
21383726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 401
Target Start/End: Original strand, 24612763 - 24612797
Alignment:
| Q |
367 |
tgttaaagagtctcacatcggataaaagatggtat |
401 |
Q |
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| T |
24612763 |
tgttaaagagtctcacatcggataaaagattgtat |
24612797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 43536802 - 43536773
Alignment:
| Q |
368 |
gttaaagagtctcacatcggataaaagatg |
397 |
Q |
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| T |
43536802 |
gttaaagagtctcacatcggataaaagatg |
43536773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 6312016 - 6312048
Alignment:
| Q |
367 |
tgttaaagagtctcacatcggataaaagatggt |
399 |
Q |
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| T |
6312016 |
tgttaaagagtctcacatcggacaaaagatggt |
6312048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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