View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_17 (Length: 430)
Name: NF20308_low_17
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Original strand, 16814726 - 16815120
Alignment:
| Q |
16 |
atcaagcattgaagaagaaaaatcacaatcacaagtagcaatcaaaaccctaagaaggttaggtgcttcaaataaccctagtggattaccaagnnnnnnn |
115 |
Q |
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| T |
16814726 |
atcaagcattgaagaagaaaaatcacaatcacaagtagcaatcaaaaccctaagaaggttaggtgcttcaaataaccctagtggattaccaagaaaaaaa |
16814825 |
T |
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| Q |
116 |
gatattggagaaaaaagcacactagggttccctacaatgagacaagtttcagtttcagatacattactaacaaatgagatacttgtaatgagacgaatag |
215 |
Q |
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| T |
16814826 |
gatattggagaaaaaagcacaatagggttccctacaatgagacaagtttcagtttcagatacattactaacaaatgagatacttgtaatgagacgaatag |
16814925 |
T |
|
| Q |
216 |
tcgagaacgtttcgccacatccaaatgtgattgatctttatgatgtatatgaggacacaaatggtgttcatcttgttcttgagctttgttccggtggcga |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16814926 |
tcgaaaacgtttcgccacatccaaatgtgattgatctttatgatgtatatgaggacacaaatggtgttcatcttgttcttgagctttgttccggtggtga |
16815025 |
T |
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| Q |
316 |
acttttcgataggattgttgcacaagataagtatagtgagactgaagctgcaactgtggttcatcaaatagcttcagggttagaagctgttcata |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16815026 |
acttttcgataggattgttgcacaagataagtatagtgagactgaagctgcaactgtggttcatcaaatagcttcagggttagaagctgttcata |
16815120 |
T |
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