View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_low_18 (Length: 406)

Name: NF20308_low_18
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_low_18
NF20308_low_18
[»] chr5 (4 HSPs)
chr5 (245-389)||(16078721-16078865)
chr5 (1-198)||(16078524-16078717)
chr5 (164-316)||(16068297-16068452)
chr5 (244-356)||(16071664-16071777)
[»] scaffold0479 (2 HSPs)
scaffold0479 (271-372)||(12844-12945)
scaffold0479 (153-198)||(12969-13014)
[»] chr7 (3 HSPs)
chr7 (247-331)||(3860401-3860485)
chr7 (247-314)||(3886926-3886994)
chr7 (247-295)||(3900227-3900275)
[»] scaffold0210 (2 HSPs)
scaffold0210 (271-354)||(3388-3471)
scaffold0210 (253-339)||(11603-11689)
[»] chr3 (3 HSPs)
chr3 (271-354)||(12721197-12721280)
chr3 (253-339)||(12713226-12713312)
chr3 (153-198)||(12721128-12721173)
[»] scaffold0464 (1 HSPs)
scaffold0464 (227-316)||(12133-12225)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 245 - 389
Target Start/End: Original strand, 16078721 - 16078865
Alignment:
Q  245 tatatgccttttatttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatgacctca 344  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16078721 tatatgccttttatttttctttcctcttgtgtgatactcattttaattatgtttttacttcttcaggttgctgtgcttttcgaaggccacgatgacctca 16078820  T
Q  345 ttgacgggtttacaaatttcattcctcttcgtcggtagtaatata 389  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  16078821 ttgaagggtttacaaatttcattcctcttcgtcgctagtaatata 16078865  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 16078524 - 16078717
Alignment:
Q  1 agagaagactgttggtaatgttactagtgaggtatgtattgtttatgtgaaatgatatcgataaaatcattttgaaacaactttaaaaaatannnnnnna 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |    
T  16078524 agagaagactgttggtaatgttattagtgaggtatgtgttgtttatgtgaaatgatatcgataaaatcattttgaaacaactttaaaaa-tattttttta 16078622  T
Q  101 ttggaaaaaaacaatagagtgtgaaatagggatagagnnnnnnnnnnnnnnnttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa 198  Q
    |||||||||||||||  ||||||||||| ||||||||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  16078623 ttggaaaaaaacaat--agtgtgaaataaggatagag-aaaaaaagtaaaaattgtttatgtcatgtggtcaaaattacaattgagataccataaaaa 16078717  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 16068297 - 16068452
Alignment:
Q  164 atgtggtcaaaattacaattgagataccataaaaaatattattgctatcataattaattgcacctctaaactacaattacatatatgcc-ttttattttt 262  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||| |||| || ||||||||||||||||||||||| ||||||||||    
T  16068297 atgtggtcaaaatgacaattgagataccat-aaaaatactattgctatcacaattaa-tgcagctataaactacaattacatatatgcctttttattttt 16068394  T
Q  263 ctttcctcttgtgtgatgctc----attttaattatgtttttacttcttcaggttgct 316  Q
    ||||||||||||||||| |||    ||||| |||||| ||||||||||||||||||||    
T  16068395 ctttcctcttgtgtgatactcattaattttcattatgattttacttcttcaggttgct 16068452  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 356
Target Start/End: Original strand, 16071664 - 16071777
Alignment:
Q  244 atatatgcctttt-atttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatgacct 342  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||   ||||| ||||||||||| || | || ||||||||||| || || ||    
T  16071664 atatatgcctttttatttttctttcctcttgtgtgatactcattttaattaatattttatttcttcaggtttctttactctttgaaggccatgaggatct 16071763  T
Q  343 cattgacgggttta 356  Q
     ||||| |||||||    
T  16071764 tattgatgggttta 16071777  T

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Target: scaffold0479 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 12945 - 12844
Alignment:
Q  271 ttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatgacctcattgacgggtttacaaatttcattcct 370  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| |||||| |||||    
T  12945 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtttactaatttcgttcct 12846  T
Q  371 ct 372  Q
    ||    
T  12845 ct 12844  T

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Target: scaffold0479; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 13014 - 12969
Alignment:
Q  153 ttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa 198  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||    
T  13014 ttgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaa 12969  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 3860401 - 3860485
Alignment:
Q  247 tatgccttttatttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggc 331  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||| | | ||||||||||||    
T  3860401 tatgccttttatttttcttttctcttgtgtgatcctcattataattatgattttacttcttcaggttggtttactttttgaaggc 3860485  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 3886926 - 3886994
Alignment:
Q  247 tatgcctttta-tttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttg 314  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  3886926 tatgccttttagtttttcttttctcttgtgtgatgctctttttaattatgattttaattcttcaggttg 3886994  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 3900227 - 3900275
Alignment:
Q  247 tatgccttttatttttctttcctcttgtgtgatgctcattttaattatg 295  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  3900227 tatgccttttatttttcttttctcttgtgtgatactctttttaattatg 3900275  T

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Target: scaffold0210 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 3471 - 3388
Alignment:
Q  271 ttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatgacctcattgacgggtt 354  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||    
T  3471 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtt 3388  T

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Target: scaffold0210; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 11689 - 11603
Alignment:
Q  253 ttttatttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatga 339  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||| | | |||||||||||||| |||||    
T  11689 ttttatttttctttcctcttgtgtgatactcattttgattatgattttactttttcaggttggtttactttttgaaggccatgatga 11603  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 12721197 - 12721280
Alignment:
Q  271 ttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatgacctcattgacgggtt 354  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||    
T  12721197 ttgtgtgatactcattttaattatgattttacttcttcaggttgctgtacttttcgaaggccatgatgatctcattgatgggtt 12721280  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 12713226 - 12713312
Alignment:
Q  253 ttttatttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttgctgtgctttttgaaggccacgatga 339  Q
    ||||||||||||| ||||||||||||| |||||||| |||||| |||||||| ||||||||| | | ||||||||||| || |||||    
T  12713226 ttttatttttcttccctcttgtgtgatactcattttgattatgattttactttttcaggttggtttactttttgaaggtcatgatga 12713312  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 12721128 - 12721173
Alignment:
Q  153 ttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa 198  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||    
T  12721128 ttgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaa 12721173  T

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Target: scaffold0464 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 12225 - 12133
Alignment:
Q  227 ctctaaactacaattacatatatgcct---tttatttttctttcctcttgtgtgatgctcattttaattatgtttttacttcttcaggttgct 316  Q
    |||||||| ||||||||| ||||||||   ||||| |||||||||| ||| ||||| ||||||||||||||| |||||||| |||||||||||    
T  12225 ctctaaacaacaattacaaatatgcctctttttatctttctttcctattgcgtgatactcattttaattatgattttactttttcaggttgct 12133  T

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