View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_19 (Length: 397)
Name: NF20308_low_19
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 12908357 - 12907985
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagctggttagagctaacattcaactggga |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
|
| Q |
111 |
gagagacggtagggtggcgagcgacgctggaataacaccggaaaacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
|
| Q |
211 |
gggatcgggccactaaggttgttggagttaagttcgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagttatgttgagagctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12908157 |
gggatcgggccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagttatgttgagagctc |
12908058 |
T |
|
| Q |
311 |
cggttaaccagagtgttccaaggaaagggaggtcgccgaactccgctggaatcgtaccagacaaaccaaaagt |
383 |
Q |
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| T |
12908057 |
ccgttaaccaaagtgttccaaggaaagggaggtcgccgaactcagctggaatcgtaccagacaaaccaaaagt |
12907985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 7726971 - 7727258
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagctggttagagctaacattc |
102 |
Q |
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||||||| |||| |||||||||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||| |||||| |||| ||||| |
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| T |
7726971 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacatta |
7727070 |
T |
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| Q |
103 |
aactgggagagagacggtagggtggcgagcgacgctggaataacaccggaaaacttgttgttagacaaatcaacctcttctaagcgcttcaaccggccta |
202 |
Q |
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||||| || |||||||||| || | ||| |||||| |||||||||||||| |||| ||||||||||||||||| ||| | ||||| ||||||| |||||| |
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| T |
7727071 |
aactgcgaaagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7727170 |
T |
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| Q |
203 |
ggaaggtggggatcgggccactaaggttgttggagttaagttcgaggcttcgcaattttttgagtttgctgaaagagttagggattgg |
290 |
Q |
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| || ||||||||||| |||||||| ||||||| ||| || || || | | | ||||||||||||||||||||||||||||||| |
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| T |
7727171 |
gaaaagtggggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattgg |
7727258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 7713454 - 7713749
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagctggttagagctaacattc |
102 |
Q |
| |
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||||||| |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
7713454 |
aggagcatcacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattg |
7713553 |
T |
|
| Q |
103 |
aactgggagagagacggtagggtggcgagcgacgctggaataacaccggaaaacttgttgttagacaaatcaacctcttctaagcgcttcaaccggccta |
202 |
Q |
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||||| || |||||| ||||| || |||||||||| |||||| ||||||| ||||||||||| |||||||||||||||| | |||||||||| ||| | |
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| T |
7713554 |
aactgcgaaagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgccca |
7713653 |
T |
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| Q |
203 |
ggaaggtggggatcgggccactaaggttgttggagttaagttcgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
298 |
Q |
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| T |
7713654 |
gaaattcagggattggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagtta |
7713749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 7699109 - 7699404
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagctggttagagctaacattc |
102 |
Q |
| |
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||||||| |||| |||||||||||||||||||||| | |||| | |||||||||||||||| ||| || |||||||| ||||||||| |||||||||| |
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| T |
7699109 |
aggagcaccacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacatta |
7699208 |
T |
|
| Q |
103 |
aactgggagagagacggtagggtggcgagcgacgctggaataacaccggaaaacttgttgttagacaaatcaacctcttctaagcgcttcaaccggccta |
202 |
Q |
| |
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||||| || ||||| ||||| || |||| ||||| |||||| ||||| |||||||||||||||||||||||||| | || |||||||||| ||||| |
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| T |
7699209 |
aactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgccta |
7699308 |
T |
|
| Q |
203 |
ggaaggtggggatcgggccactaaggttgttggagttaagttcgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
298 |
Q |
| |
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| |||| |||||| || ||||||||| ||||||| ||| || || || | | | ||| ||||||||| ||||||||||||||||||||||||| |
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| T |
7699309 |
gaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaagagttagggattggcccagtta |
7699404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 7731131 - 7731426
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagctggttagagctaacattc |
102 |
Q |
| |
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||||||| |||| |||||||||||||| |||||| |||||| | ||||| |||| |||||||| || ||||||||||| |||||| |||| ||||| |
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| T |
7731131 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacatta |
7731230 |
T |
|
| Q |
103 |
aactgggagagagacggtagggtggcgagcgacgctggaataacaccggaaaacttgttgttagacaaatcaacctcttctaagcgcttcaaccggccta |
202 |
Q |
| |
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||||| || |||||||||| || | ||| |||||| |||||||||||||| |||| ||||||||||||||||| ||| | ||||| ||||||| |||||| |
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| T |
7731231 |
aactgcgaaagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7731330 |
T |
|
| Q |
203 |
ggaaggtggggatcgggccactaaggttgttggagttaagttcgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
298 |
Q |
| |
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| || ||||||||||| |||||||| ||||||| ||| || || || | | | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
7731331 |
gaaaagtggggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagtta |
7731426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 7739289 - 7739584
Alignment:
| Q |
3 |
aggagcagcacagaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagctggttagagctaacattc |
102 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||| |||||| | || || |||| |||||||| || ||||||||||| |||||| |||| || || |
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| T |
7739289 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgtta |
7739388 |
T |
|
| Q |
103 |
aactgggagagagacggtagggtggcgagcgacgctggaataacaccggaaaacttgttgttagacaaatcaacctcttctaagcgcttcaaccggccta |
202 |
Q |
| |
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|||||||| ||||||||||||| | ||| |||||| ||||||||||||| ||||| |||||||||||||||| ||| | ||||| ||||||| |||||| |
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| T |
7739389 |
aactgggaaagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggccta |
7739488 |
T |
|
| Q |
203 |
ggaaggtggggatcgggccactaaggttgttggagttaagttcgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
298 |
Q |
| |
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|||| |||||||||| |||||||| ||||||| ||| ||||| || | | | ||| ||||||||||||||||||||| ||||||||||||| |
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| T |
7739489 |
ggaaagtggggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagtta |
7739584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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