View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_low_2 (Length: 717)

Name: NF20308_low_2
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_low_2
NF20308_low_2
[»] chr8 (6 HSPs)
chr8 (370-707)||(25264699-25265038)
chr8 (421-707)||(33294787-33295073)
chr8 (253-297)||(14791449-14791493)
chr8 (253-298)||(20112271-20112315)
chr8 (254-295)||(20111588-20111629)
chr8 (253-298)||(14790768-14790814)
[»] chr4 (13 HSPs)
chr4 (421-709)||(53355512-53355798)
chr4 (421-709)||(19995414-19995703)
chr4 (421-707)||(55948294-55948582)
chr4 (421-707)||(44252021-44252307)
chr4 (441-657)||(39653613-39653829)
chr4 (253-297)||(620566-620610)
chr4 (253-297)||(621531-621575)
chr4 (256-298)||(27455015-27455057)
chr4 (253-298)||(27455708-27455753)
chr4 (253-292)||(11147841-11147880)
chr4 (254-298)||(21225895-21225938)
chr4 (267-297)||(49681372-49681402)
chr4 (254-295)||(21226521-21226561)
[»] chr1 (11 HSPs)
chr1 (421-709)||(33258274-33258561)
chr1 (421-709)||(33278446-33278733)
chr1 (421-709)||(28920006-28920294)
chr1 (370-707)||(36146278-36146615)
chr1 (421-707)||(7654621-7654907)
chr1 (421-707)||(19056700-19056986)
chr1 (422-651)||(24088702-24088933)
chr1 (253-297)||(36475966-36476010)
chr1 (253-296)||(36475369-36475411)
chr1 (253-295)||(47445084-47445126)
chr1 (253-298)||(47445769-47445814)
[»] chr3 (14 HSPs)
chr3 (421-709)||(33733875-33734165)
chr3 (421-707)||(53528391-53528678)
chr3 (253-298)||(50838253-50838298)
chr3 (253-297)||(1577506-1577550)
chr3 (253-297)||(50837555-50837599)
chr3 (253-297)||(54560812-54560856)
chr3 (256-298)||(43546465-43546507)
chr3 (256-298)||(47470793-47470835)
chr3 (253-298)||(47471470-47471515)
chr3 (253-297)||(1576582-1576626)
chr3 (253-296)||(28539353-28539395)
chr3 (253-292)||(50381948-50381987)
chr3 (253-295)||(35942774-35942816)
chr3 (253-298)||(54560129-54560175)
[»] chr7 (11 HSPs)
chr7 (421-707)||(45276820-45277105)
chr7 (421-707)||(31392990-31393275)
chr7 (421-706)||(8230954-8231239)
chr7 (370-709)||(21715994-21716319)
chr7 (421-705)||(32882053-32882336)
chr7 (421-707)||(40028886-40029155)
chr7 (17-145)||(13818474-13818602)
chr7 (253-298)||(30480689-30480735)
chr7 (253-298)||(36068102-36068146)
chr7 (253-292)||(32390891-32390930)
chr7 (253-290)||(3987239-3987275)
[»] chr5 (12 HSPs)
chr5 (421-709)||(1417826-1418114)
chr5 (422-709)||(30333368-30333652)
chr5 (421-707)||(25915108-25915398)
chr5 (17-155)||(34086526-34086664)
chr5 (253-297)||(5348501-5348545)
chr5 (256-298)||(36429381-36429423)
chr5 (253-298)||(7491347-7491392)
chr5 (253-298)||(36430060-36430105)
chr5 (253-298)||(36681845-36681890)
chr5 (253-297)||(31808373-31808417)
chr5 (253-298)||(29500105-29500150)
chr5 (253-298)||(5347819-5347865)
[»] chr2 (9 HSPs)
chr2 (422-709)||(1841106-1841392)
chr2 (421-473)||(13948172-13948224)
chr2 (421-473)||(14089379-14089431)
chr2 (256-297)||(4593399-4593440)
chr2 (256-298)||(10255768-10255810)
chr2 (253-297)||(10256485-10256529)
chr2 (521-556)||(13948138-13948173)
chr2 (521-556)||(14089345-14089380)
chr2 (253-298)||(4592723-4592769)
[»] chr6 (10 HSPs)
chr6 (497-709)||(19083512-19083725)
chr6 (421-475)||(19083725-19083779)
chr6 (253-298)||(6009422-6009467)
chr6 (253-297)||(17732111-17732155)
chr6 (253-298)||(17732810-17732855)
chr6 (253-298)||(30710273-30710318)
chr6 (253-297)||(6008737-6008781)
chr6 (253-293)||(15348196-15348236)
chr6 (266-298)||(30709598-30709630)
chr6 (253-298)||(15347528-15347574)
[»] scaffold0489 (2 HSPs)
scaffold0489 (497-709)||(6251-6468)
scaffold0489 (421-475)||(6468-6522)
[»] scaffold0102 (2 HSPs)
scaffold0102 (253-298)||(33138-33183)
scaffold0102 (253-298)||(32448-32493)
[»] scaffold0169 (1 HSPs)
scaffold0169 (255-292)||(27403-27439)
[»] scaffold0020 (1 HSPs)
scaffold0020 (253-290)||(2043-2080)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 370 - 707
Target Start/End: Original strand, 25264699 - 25265038
Alignment:
Q  370 aaattcatcacaaaacccag---aaaaatactgagaaaagagatnnnnnnnnnnctcaaaatcatcatataactctcaatagacaacttctcacaaaccc 466  Q
    |||||||||| |||||||||   ||||||||| |||||||||||          |||||||||||||| | |||||||||||||||||||||||||||||    
T  25264699 aaattcatcaaaaaacccaggaaaaaaatactcagaaaagagattaaaaaaaaactcaaaatcatcatctcactctcaatagacaacttctcacaaaccc 25264798  T
Q  467 aaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatca 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25264799 aaacaaaattcccattgacaatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatca 25264898  T
Q  567 aattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaaattctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnn 666  Q
    ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||             
T  25264899 aattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatg-attttttt 25264997  T
Q  667 ncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
     |||| |||||||||||||||||||||||||||||||||||    
T  25264998 tcattaccaactctcgtctcatcattgatctcgcatctctg 25265038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 421 - 707
Target Start/End: Complemental strand, 33295073 - 33294787
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||    
T  33295073 ctcaaaatcatcatctcactctcaatagacaacttctcataaacccaaacaaaatccccattgataatggtcagattaacatctcaacactaaaatccac 33294974  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||    
T  33294973 aatgttcatagtcccaactaaacttttattaataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattaaaaaa 33294874  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||    
T  33294873 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 33294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 14791493 - 14791449
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  14791493 gttagtcaattacccccctccgtttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 20112315 - 20112271
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  20112315 gttagtcaatta-ccccctccgtttgttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 20111588 - 20111629
Alignment:
Q  254 ttagtcaattatccccctccgtttgttttggctgttaaatga 295  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  20111588 ttagtcaattacccccctccgtttgttttagctgttaaatga 20111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 14790768 - 14790814
Alignment:
Q  253 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  14790768 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 14790814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 421 - 709
Target Start/End: Original strand, 53355512 - 53355798
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  53355512 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 53355611  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  53355612 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 53355711  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||    
T  53355712 attcacaaaattctcaaattgaaaaacctaaagaatg--atttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 53355798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 421 - 709
Target Start/End: Complemental strand, 19995703 - 19995414
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19995703 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 19995604  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  19995603 aatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcaaattcccaatattgaaaaa 19995504  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg-nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||||||||||||    
T  19995503 attcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 19995414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 421 - 707
Target Start/End: Complemental strand, 55948582 - 55948294
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  55948582 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatctccattgacaatggtcagattgacatctcaacactaaaatccac 55948483  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  55948482 aatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatactcgaattcccaatattgaaaaa 55948383  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg--nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||||||||||||    
T  55948382 attcacaaaattctcaaattgaaaaacctaaagaatgattttttgttttcattaccaactctcgtctcatcattgatctcgcatctctg 55948294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 421 - 707
Target Start/End: Original strand, 44252021 - 44252307
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  44252021 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 44252120  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||    
T  44252121 aatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgatcgaattcccaatattgaaaaa 44252220  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||| ||||||||||||||||          |||| |||||||| ||||||||||||||||||||||||||    
T  44252221 attcacaaaattctcaaattaaaaaacctaaagaatgatttttttttcattaccaactcttgtctcatcattgatctcgcatctctg 44252307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 441 - 657
Target Start/End: Original strand, 39653613 - 39653829
Alignment:
Q  441 ctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccacaatgttcatagtcccaacta 540  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||| |    
T  39653613 ctcaatagacaacatctcacaaacccaaacaaaatccccattgataatggtcagattgacgcctcaacactaaaatccacaatgttcatagtcccaacaa 39653712  T
Q  541 aacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaaattctcaaaattctcaaatt 640  Q
    || | ||||||||||||||  |||||||||||||||| ||| ||||||||| |||||| | || || ||||||||||||||||| ||||| |  ||||||    
T  39653713 aattcttattgataatatcataatcaaattataacaacaaagtcctcattgagaatgctcaaattctcaatattgaaaaaattcacaaaacttccaaatt 39653812  T
Q  641 gaaaaacctaaagaatg 657  Q
    |||||||||||||||||    
T  39653813 gaaaaacctaaagaatg 39653829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 620566 - 620610
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  620566 gttagtcaattacccccctccgtttgttttggctgttaaatgact 620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 621575 - 621531
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  621575 gttagtcaattacccccctccgtttgttttggctgttaaatgact 621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 27455015 - 27455057
Alignment:
Q  256 agtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  27455015 agtcaattacccccctccgtttgttttggctgttaaatgacta 27455057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 27455753 - 27455708
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||    
T  27455753 gttagtcaattacccccctccgtttgttttggcagttaaatgacta 27455708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 11147841 - 11147880
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaa 292  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11147841 gttagtcaattacccccctccgtttgttttggctgttaaa 11147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 21225895 - 21225938
Alignment:
Q  254 ttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||    
T  21225895 ttagtcaatta-ccctctccgtttgttttggctgttaaatgacta 21225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 297
Target Start/End: Original strand, 49681372 - 49681402
Alignment:
Q  267 cccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||||||||||||||||||||||    
T  49681372 cccctccgtttgttttggctgttaaatgact 49681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 21226561 - 21226521
Alignment:
Q  254 ttagtcaattatccccctccgtttgttttggctgttaaatga 295  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  21226561 ttagtcaatta-ccccctccgtttgttttggctattaaatga 21226521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 421 - 709
Target Start/End: Original strand, 33258274 - 33258561
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33258274 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 33258373  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  33258374 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 33258473  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||| ||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||    
T  33258474 attcacaaaactctcaaattgaaaaacctaaagaatg-attttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 33258561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 421 - 709
Target Start/End: Original strand, 33278446 - 33278733
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33278446 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 33278545  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  33278546 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 33278645  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||| ||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||    
T  33278646 attcacaaaactctcaaattgaaaaacctaaagaatg-attttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 33278733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 421 - 709
Target Start/End: Complemental strand, 28920294 - 28920006
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| ||||||||||||| ||||||    
T  28920294 ctcaaaatcatcatatcactctcaatagacaacttctcacaaacccaaacaaaacccccattgacaatgatcagattgaaatctcaacactaaaatccac 28920195  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||    
T  28920194 aatgttcatagtccca-ctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaatttccaatattgaaaaa 28920096  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg-nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||||||||||||    
T  28920095 attcacaaaattctcaaattgaaaaacctaaagaatgatgttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 28920006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 370 - 707
Target Start/End: Complemental strand, 36146615 - 36146278
Alignment:
Q  370 aaattcatcacaaaacccag--aaaaatactgagaaaagagatnnnnnnnnnnctcaaaatcatcatataactctcaatagacaacttctcacaaaccca 467  Q
    |||||||||| |||||||||  ||||||||| |||||||||||          |||||||||||||| | |||||||||||||||||| |||||||||||    
T  36146615 aaattcatcaaaaaacccaggaaaaaatactcagaaaagagataaaaaaaaaactcaaaatcatcatctcactctcaatagacaacttttcacaaaccca 36146516  T
Q  468 aacaaaattcccattgacaatggtcagattgacatctcaacactaatatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaa 567  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  36146515 aacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccacaatgttcatagtctcagctaaacttttattgataatatcaaaatcaa 36146416  T
Q  568 attataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaaattctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnn 667  Q
    ||||||| || |||||||||||||||||| | |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||              
T  36146415 attataataacaaaatcctcattgtgaatactcgaattcccaatattga-aaaattcacaaaattctcaaattgaaaaacctaaagaatg-atttttttt 36146318  T
Q  668 catttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  36146317 cattaccaactctcgtctcatcattgatctcgcatctctg 36146278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 421 - 707
Target Start/End: Complemental strand, 7654907 - 7654621
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  7654907 ctcaaaatcatcatctcactctcaatagacaacttttcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 7654808  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||| |||||||||||| |||    
T  7654807 aatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatactcgaattcccaatattga-aaa 7654709  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg-nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||| ||||||||||||||||||||||           |||| |||||||||||||||||||||||||||||||||||    
T  7654708 attcacaaaattcttaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 7654621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 421 - 707
Target Start/End: Original strand, 19056700 - 19056986
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||| ||    
T  19056700 ctcaaaatcatcatctcactctcaatagacaacttctgacaaacctaaacaaaattcccattgataatggtcagattgacatctcaacactaaaatctac 19056799  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | || | ||||||||||||||    
T  19056800 aatgttcacagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcaaatttccaatattgaaaaa 19056899  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    ||||  |||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||    
T  19056900 attcaaaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 19056986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 422 - 651
Target Start/End: Complemental strand, 24088933 - 24088702
Alignment:
Q  422 tcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccaca 521  Q
    ||||||||||||||| |  ||||||| ||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| || |||||||    
T  24088933 tcaaaatcatcatatcatcctcaatacacaacttctcacaaacctaaacaaaattctcattgacagtggacagattgacatctcaacaccaaaatccaca 24088834  T
Q  522 atgttc--atagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaa 619  Q
    |||| |  ||||||| ||| ||||| ||||||||||||||  |||||||||||||||| ||||||||||||  ||||||  ||| ||||||| |||||||    
T  24088833 atgtccatatagtcctaacaaaactcttattgataatatcataatcaaattataacaaaaaaatcctcattaagaatgcttgaattcccaattttgaaaa 24088734  T
Q  620 aattctcaaaattctcaaattgaaaaacctaa 651  Q
    ||||   |||||||  ||||||||||||||||    
T  24088733 aattacgaaaattccaaaattgaaaaacctaa 24088702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 36476010 - 36475966
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  36476010 gttagtcaattacccccctccatttgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 36475369 - 36475411
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgac 296  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  36475369 gttagtcaatta-ccccctccgtttgttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 47445084 - 47445126
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatga 295  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  47445084 gttagtcaattacccccctccgtttattttggctgttaaatga 47445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 47445814 - 47445769
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||    
T  47445814 gttagtcaattacccccctccatttgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 210; Significance: 1e-114; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 421 - 709
Target Start/End: Complemental strand, 33734165 - 33733875
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33734165 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 33734066  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  33734065 aatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 33733966  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg--nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||||||||||||||    
T  33733965 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 33733875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 421 - 707
Target Start/End: Original strand, 53528391 - 53528678
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  53528391 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaattccaattgacaatggtcagattgacatctcaacactaaaatccac 53528490  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  53528491 aatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 53528590  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg-nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||||||||||    
T  53528591 attcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgcatctctg 53528678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 50838298 - 50838253
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  50838298 gttagtcaattacccccctccgtttgttttggctgttaaatgacta 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 1577550 - 1577506
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  1577550 gttagtcaattacccccctccgtttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 50837555 - 50837599
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  50837555 gttagtcaattacccccctccgtttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 54560856 - 54560812
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  54560856 gttagtcaattacccccctccgtttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 43546465 - 43546507
Alignment:
Q  256 agtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  43546465 agtcaattacccccctccgtttgttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 47470793 - 47470835
Alignment:
Q  256 agtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  47470793 agtcaattacccccctccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 47471515 - 47471470
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  47471515 gttagtcaattacccccctctgtttgttttggctgttaaatgacta 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 1576582 - 1576626
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  1576582 gttagtcaattacccccctccgtttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 28539395 - 28539353
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgac 296  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  28539395 gttagtcaattatcctc-tccgtttgttttggctgttaaatgac 28539353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 50381948 - 50381987
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaa 292  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  50381948 gttagtcaattacccccctctgtttgttttggctgttaaa 50381987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 35942816 - 35942774
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatga 295  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  35942816 gttagtcaattacccccctccatttgttttggttgttaaatga 35942774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 54560129 - 54560175
Alignment:
Q  253 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  54560129 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 54560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 421 - 707
Target Start/End: Original strand, 45276820 - 45277105
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  45276820 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatcttaacactaaaatccac 45276919  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  45276920 aatgttcatagtcccaactaaaattttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 45277019  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||    
T  45277020 attcacaaaattctcaaattgaaaaacctaaagaatg-attttttttcattaccaactctcgtctcatcattgatctcgcatctctg 45277105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 421 - 707
Target Start/End: Complemental strand, 31393275 - 31392990
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  31393275 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 31393176  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||    
T  31393175 aatgttcatagtctcaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaatttccaatattgaaaaa 31393076  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||    
T  31393075 attcacaaaattctcaaattgaaaaacctaaagaatg-attttttttcattaccaactctcgtctcatcattgatctcgcatctctg 31392990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 421 - 706
Target Start/End: Complemental strand, 8231239 - 8230954
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||    
T  8231239 ctcaaaatcatcatctcattctcaatagacaacttctcacaaacccaaacaaaatctccattgacaatggtcagattgacatctcaacactaaaattcac 8231140  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  8231139 aatgttcatagtctcaaataaacttttattgttaatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaa 8231040  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctct 706  Q
    |||| ||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||||||||||    
T  8231039 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcattgatctcgcatctct 8230954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 370 - 709
Target Start/End: Complemental strand, 21716319 - 21715994
Alignment:
Q  370 aaattcatcacaaaacccag--aaaaatactgagaaaagagatnnnnnnnnnnctcaaaatcatcatataactctcaatagacaacttctcacaaaccca 467  Q
    |||||||||| |||||||||  ||||||||| |||||||||||          |||||||||||||| | ||||||||||||||||||||||||||||||    
T  21716319 aaattcatcaaaaaacccaggaaaaaatactcagaaaagagattaaaaaaaaactcaaaatcatcatctcactctcaatagacaacttctcacaaaccca 21716220  T
Q  468 aacaaaattcccattgacaatggtcagattgacatctcaacactaatatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaa 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||               ||||||||||||||||||||||||||||||    
T  21716219 aacaaaattcccattgacaatggtcagattgacatctcaacactaaaatccacaa---------------ctaaacttttattgataatatcgaaatcaa 21716135  T
Q  568 attataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaaattctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnn 667  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||              
T  21716134 attataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatg-atttttttt 21716036  T
Q  668 catttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  21716035 cattaccaactctcgtctcatcattgatctcgcatctctgct 21715994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 421 - 705
Target Start/End: Complemental strand, 32882336 - 32882053
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | ||||||||| ||||||||||||||||| |||||||||  ||||||||| ||||||| ||||||||||||||||||| ||||||    
T  32882336 ctcaaaatcatcatctcactctcaatggacaacttctcacaaactcaaacaaaac-cccattgactatggtcaaattgacatctcaacactaaaatccac 32882238  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  32882237 aatgttcatagtccgaactaattttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaactcccaatattgaaaaa 32882138  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctc 705  Q
    |||| ||||||||| ||||||||||||||||||||||          |||| | |||||||||||||||||||||||||||||||    
T  32882137 attcacaaaattctaaaattgaaaaacctaaagaatgatttttttttcattacaaactctcgtctcatcattgatctcgcatctc 32882053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 421 - 707
Target Start/End: Original strand, 40028886 - 40029155
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||    
T  40028886 ctcaaaatcatcatctcactctcaatagacaacttctcacaaaaccaaacaaaatcctcattgacaatggtcagattgacatctcaacactaaaatccac 40028985  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    ||||||||                  ||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||| | ||||||||| ||||    
T  40028986 aatgttca------------------tattgataatatcaaaatcaaattataacaacaaaatcctcattatgaatgctcgaatttccaatattg-aaaa 40029066  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatg--nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| ||||||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||| ||||||||    
T  40029067 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttttcattaccaactctcgtctcatcattgatctcacatctctg 40029155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 13818602 - 13818474
Alignment:
Q  17 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||    
T  13818602 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacatagtgttggtttcggat 13818503  T
Q  117 cagcctcatgatgagataggatagaccac 145  Q
    || |||||||||| |||||||||||||||    
T  13818502 caacctcatgatgggataggatagaccac 13818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 30480735 - 30480689
Alignment:
Q  253 gttagtcaattatccccctccgttt-gttttggctgttaaatgacta 298  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  30480735 gttagtcaattatccccctccgtttggttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 36068146 - 36068102
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  36068146 gttagtcaattacccccctccgtttgttttggct-ttaaatgacta 36068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 32390930 - 32390891
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaa 292  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  32390930 gttagtcaattacccccctccgtttgttttgactgttaaa 32390891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 3987275 - 3987239
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgtta 290  Q
    |||||||||||| |||||||||||||||||||||||||    
T  3987275 gttagtcaatta-ccccctccgtttgttttggctgtta 3987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 421 - 709
Target Start/End: Original strand, 1417826 - 1418114
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  1417826 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaatcaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 1417925  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||||    
T  1417926 aatgttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcactgtgaatgctcgaattcccaatattgaaaaa 1418025  T
Q  621 attctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    |||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||    
T  1418026 attcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 1418114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 422 - 709
Target Start/End: Complemental strand, 30333652 - 30333368
Alignment:
Q  422 tcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccaca 521  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30333652 tcaaaatcatcatctccctctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaaaatccaca 30333553  T
Q  522 atgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaaa 621  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||    
T  30333552 atgttcatagtccc-actaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattg-aaaaa 30333455  T
Q  622 ttctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    ||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||    
T  30333454 ttcacaaaattctcaaattgaaaaacctaaagaatg-attttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 30333368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 421 - 707
Target Start/End: Original strand, 25915108 - 25915398
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccac 520  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  25915108 ctcaaaatcatcatctcactctcaatagacaacttcccacaaacccaaacaaaatccccattgacaatggtcagattgacatctcaacactaaaatccac 25915207  T
Q  521 aatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaa 620  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  25915208 aatgttcatagtcccagctaaacttttattgataatatcaaaatcaaatcataacaacaaaatcctcattgtgaatgctcaaattcccaatattgaaaaa 25915307  T
Q  621 attctcaaaattctcaaattg-aaaaacctaaagaatg---nnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctg 707  Q
    |||| |||||||||||||||| ||||||||||||||||             |||| |||||||||||||||||||||||||||||||||||    
T  25915308 attcacaaaattctcaaattgaaaaaacctaaagaatgattttttttttctcattaccaactctcgtctcatcattgatctcgcatctctg 25915398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 34086526 - 34086664
Alignment:
Q  17 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086526 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggat 34086625  T
Q  117 cagcctcatgatgagataggatagaccacatataattcg 155  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34086626 cagcctcatgatgagataggatagaccacatataattcg 34086664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 5348545 - 5348501
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5348545 gttagtcaattacccccctccgtttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 36429381 - 36429423
Alignment:
Q  256 agtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  36429381 agtcaattacccccctccgtttgttttggctgttaaatgacta 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 7491347 - 7491392
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  7491347 gttagtcaattaccccccttcgtttgttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 36430105 - 36430060
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  36430105 gttagtcaattacccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 36681890 - 36681845
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||    
T  36681890 gttagtcaattacccccctccgtttgttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 31808373 - 31808417
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  31808373 gttagtcaattacccccctcagtttgttttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 29500105 - 29500150
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  29500105 gttagtcaattacccctctccgtttgttttggctcttaaatgacta 29500150  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 5347819 - 5347865
Alignment:
Q  253 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  5347819 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 5347865  T

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Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 422 - 709
Target Start/End: Complemental strand, 1841392 - 1841106
Alignment:
Q  422 tcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaattcccattgacaatggtcagattgacatctcaacactaatatccaca 521  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||    
T  1841392 tcaaaatcatcatctcactctcaatagacaacttctcacaaacctaaacaaaatccccattgacaatggtcagattaacatctcaacactaaaatccaca 1841293  T
Q  522 atgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaatgcgcgaactcccaatattgaaaaaa 621  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||    
T  1841292 atgttcatagtcccaactaaacttttattgataatatcaaaataaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaacaa 1841193  T
Q  622 ttctcaaaattctcaaattgaaaaacctaaagaatgnnnnnnnnnncatttccaactctcgtctcatcattgatctcgcatctctgct 709  Q
    ||| ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||    
T  1841192 ttcacaaaattctcaaattgaaaaacctaaagaatg-attttttttcattaccaactctcgtctcatcattgatctcgcatctctgct 1841106  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 13948224 - 13948172
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaa 473  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  13948224 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaa 13948172  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 14089431 - 14089379
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaa 473  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  14089431 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaaacaaa 14089379  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 4593440 - 4593399
Alignment:
Q  256 agtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4593440 agtcaattatccccctccgtttgttttggctgttaaatgact 4593399  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 10255768 - 10255810
Alignment:
Q  256 agtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  10255768 agtcaattacccccctccgtttgttttggctgttaaatgacta 10255810  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 10256529 - 10256485
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  10256529 gttagtcaattaccccgctccgtttgttttggctattaaatgact 10256485  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 556
Target Start/End: Complemental strand, 13948173 - 13948138
Alignment:
Q  521 aatgttcatagtcccaactaaacttttattgataat 556  Q
    |||||||||||||||||||||| |||||||||||||    
T  13948173 aatgttcatagtcccaactaaatttttattgataat 13948138  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 556
Target Start/End: Complemental strand, 14089380 - 14089345
Alignment:
Q  521 aatgttcatagtcccaactaaacttttattgataat 556  Q
    |||||||||||||||||||||| |||||||||||||    
T  14089380 aatgttcatagtcccaactaaatttttattgataat 14089345  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 4592723 - 4592769
Alignment:
Q  253 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  4592723 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 4592769  T

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Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 497 - 709
Target Start/End: Complemental strand, 19083725 - 19083512
Alignment:
Q  497 tgacatctcaacactaatatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaataaaatcctcattgtgaat 596  Q
    ||||| ||||||||||| |||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  19083725 tgacaactcaacactaaaatccacaatgttcatagtcataaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaat 19083626  T
Q  597 gcgcgaactcccaatattgaaaaaattctcaaaattctcaaattgaaaaacctaaagaatg-nnnnnnnnnncatttccaactctcgtctcatcattgat 695  Q
    || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||    
T  19083625 gctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgat 19083526  T
Q  696 ctcgcatctctgct 709  Q
    ||||||||||||||    
T  19083525 ctcgcatctctgct 19083512  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 475
Target Start/End: Complemental strand, 19083779 - 19083725
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaat 475  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  19083779 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaatcaaaat 19083725  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 6009467 - 6009422
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  6009467 gttagtcaattatccctctccgtttgttttggctgttaaatgacta 6009422  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 17732111 - 17732155
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  17732111 gttagtcaattacccccctccgtttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 17732855 - 17732810
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  17732855 gttagccaattacccccctccgtttgttttggctgttaaatgacta 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 30710318 - 30710273
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||| || |||||||||||||||||||||||||    
T  30710318 gttagtcaattacccccatctgtttgttttggctgttaaatgacta 30710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 6008737 - 6008781
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgact 297  Q
    |||||||||| | |||||||| |||||||||||||||||||||||    
T  6008737 gttagtcaatcacccccctccatttgttttggctgttaaatgact 6008781  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 15348236 - 15348196
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaat 293  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  15348236 gttagtcaattacccccttccgtttgttttggctgttaaat 15348196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 30709598 - 30709630
Alignment:
Q  266 ccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||||||||||||||||||||||||    
T  30709598 ccccctccgtttgttttggctgttaaatgacta 30709630  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 15347528 - 15347574
Alignment:
Q  253 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  15347528 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 15347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 497 - 709
Target Start/End: Complemental strand, 6468 - 6251
Alignment:
Q  497 tgacatctcaacactaatatccacaatgttcatagtc-ccaactaaac-ttttattgataatatcgaaatcaaattataacaataaaatcctcattgtga 594  Q
    ||||| ||||||||||| |||||||||||||||||||   || ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6468 tgacaactcaacactaaaatccacaatgttcatagtcataaattaaactttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtga 6369  T
Q  595 atgcgcgaactcccaatattgaaaaaattctcaaaattctcaaattgaaaaacctaaagaatg---nnnnnnnnnncatttccaactctcgtctcatcat 691  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||             |||| |||||||||||||||||||    
T  6368 atgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttttcattaccaactctcgtctcatcat 6269  T
Q  692 tgatctcgcatctctgct 709  Q
    ||||||||||||||||||    
T  6268 tgatctcgcatctctgct 6251  T

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Target: scaffold0489; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 475
Target Start/End: Complemental strand, 6522 - 6468
Alignment:
Q  421 ctcaaaatcatcatataactctcaatagacaacttctcacaaacccaaacaaaat 475  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  6522 ctcaaaatcatcatctcactctcaatagacaacttctcacaaacccaatcaaaat 6468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 33183 - 33138
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  33183 gttagtcaattacccccctccgtttgttttggctgttaaatgacta 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 32448 - 32493
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 298  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||    
T  32448 gttagtcaataacccctctccgtttgttttggctgttaaatgacta 32493  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 27439 - 27403
Alignment:
Q  255 tagtcaattatccccctccgtttgttttggctgttaaa 292  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27439 tagtcaatta-ccccctccgtttgttttggctgttaaa 27403  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 2043 - 2080
Alignment:
Q  253 gttagtcaattatccccctccgtttgttttggctgtta 290  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  2043 gttagtcaattacccccctccgtctgttttggctgtta 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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