View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_20 (Length: 385)
Name: NF20308_low_20
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 7812235 - 7811889
Alignment:
| Q |
16 |
tcaacttcaaaacttgagaagtgtttgtgtgttttaatattgcagaattggcaattttgaactgtgaccagttatctttaggtaccaatgaggacccaag |
115 |
Q |
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| T |
7812235 |
tcaacttcaaaacttgagaagtgtttgtgtgttttaatattgcagaattggcaattttgaactgtgaccagttatctttaggtaccattgaggacccaag |
7812136 |
T |
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| Q |
116 |
ctctggtaatgtttccaaatgacagtttccatcttttttccaatctccacctctgtatgatacatgtcacataaatttacttgttgatcaattgtccacg |
215 |
Q |
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| T |
7812135 |
ctctggtagtgtttccaaatgacagtttccatcttttttccaatctccacctctgtatgatacatgtcacataa-----------gtaaaattgtccatg |
7812047 |
T |
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| Q |
216 |
agacgttagctcaatagtaaaagtttgattttataatttcgaacgacgaagtttaaatccctttagactttattataaaataattattaatgtcacttta |
315 |
Q |
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| T |
7812046 |
agacgttagctcaatagtaaaagtttgattttataatttcgagcgacgaagtttaaatccctttagactttattataaaataattattaatgtcacttta |
7811947 |
T |
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| Q |
316 |
atnnnnnnnnnttccatttctccaatgtttttcaaaattattcaaaaatgttaattcatc |
375 |
Q |
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| T |
7811946 |
at--aaaaaaattccatttctccaatgtttttcaaaattattcaaaaatgttaattcatc |
7811889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 7821692 - 7821626
Alignment:
| Q |
125 |
tgtttccaaatgacagtttccatcttttttccaatctccacctctgtatgatacatgtcacataaattt |
193 |
Q |
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| T |
7821692 |
tgtttccaaatgacattttccacctttgttccaatctccacctctgta--atacatgtcacataaattt |
7821626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 7821764 - 7821717
Alignment:
| Q |
33 |
gaagtgtttgtgtgttttaatattgcagaattggcaattttgaactgt |
80 |
Q |
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| T |
7821764 |
gaagtgtttttgtgtgctaatattgcagaattggcaattttgaactgt |
7821717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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