View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_23 (Length: 369)
Name: NF20308_low_23
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 12582679 - 12583013
Alignment:
| Q |
17 |
aatatgtgtcattgtctgttggttgtaagaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtacaacttcattaaggaattt |
116 |
Q |
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| T |
12582679 |
aatatgtgtcattgtctgttggttgtaagaagtatttaatttggattcttattgaaaatttttaatggaccagtaagggtacaacttcattaaggaattt |
12582778 |
T |
|
| Q |
117 |
cataaaagctattcagctacagcacccaatagtaaaatatgtaaatatttatgttgatgcaaatctaatttggatgatgattccatgaatgatccatgta |
216 |
Q |
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| T |
12582779 |
cataaaagctattcagctacagcacccaatagtaaaatatgtaaatatttatgttgatgcaaatctgatttggatgatgattccatgaatgatccatgta |
12582878 |
T |
|
| Q |
217 |
taacaccaaataacaaagtcctaatggaaatgggtcaagacatagnnnnnnngagctaacttttaactatgataatattgttaatccgagtgagatttga |
316 |
Q |
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| T |
12582879 |
taacaccaaataacaaagtcctaatggaaatgggtcaagacatagaaaaaaagagctaacttttaactatgataatattgttaatccgagtgagatttga |
12582978 |
T |
|
| Q |
317 |
caggttcagccaggacaacatcctttatctgttct |
351 |
Q |
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| T |
12582979 |
caggttcagccaggacaacatcatttatttgttct |
12583013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 12522390 - 12522579
Alignment:
| Q |
42 |
taagaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtacaacttcattaaggaatttcataaaagctattcagctacagcac |
141 |
Q |
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| T |
12522390 |
taagaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtgcaacttcatcaaggaatttcataaaagctattcagctacaacac |
12522489 |
T |
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| Q |
142 |
ccaatagtaaaatatgtaaatatttatgttgatgcaaatctaatttggatgatgattccatgaatgatccatgtataacaccaaataacaa |
232 |
Q |
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| T |
12522490 |
ccaagagtaaaatctgtaaata-atatgttgatggaaatccgatttggatgatgattccatgaatgatccacctataacaccacataacaa |
12522579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 12498581 - 12498794
Alignment:
| Q |
17 |
aatatgtgtcattgtc-tgttggttgtaagaagtatttaatttggattcttattgaaaacttttaatggaccagtaagggtacaacttcattaaggaatt |
115 |
Q |
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| T |
12498581 |
aatatgtgtcagtgtcgtgttcgttttaaaaagtatttaatttggattcttattgaaaacatttaatggaccagtaagggtgcaacttcatcaaggaatt |
12498680 |
T |
|
| Q |
116 |
tcataaaagctattcagctacagcacccaatagtaaaatatgtaaatatttatgttgatgcaaatctaatttggatgatgattccatgaatgatccatgt |
215 |
Q |
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| T |
12498681 |
tcataaaagctatttagctacaacacccaagagtaaaagctgtaaataattatgttgatgcaaatccgatttggatgatgattccatgaatgatctacct |
12498780 |
T |
|
| Q |
216 |
ataacaccaaataa |
229 |
Q |
| |
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| T |
12498781 |
ataacaccacataa |
12498794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 439778 - 439735
Alignment:
| Q |
56 |
tttggattcttattgaaaacttttaatggaccagtaagggtaca |
99 |
Q |
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| T |
439778 |
tttggatccttatttaaaacttttaatggatcagtaagggtaca |
439735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 848153 - 848219
Alignment:
| Q |
160 |
aatatttatgttgatgcaaatctaatttggatgatgattccatgaatgatccatgtataacaccaaa |
226 |
Q |
| |
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||||||||||||| |||| |||| |||||| |||||||| |||| |||||||| |||| ||||||| |
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| T |
848153 |
aatatttatgttgttgcagatctgatttggttgatgatttcatggatgatccacctatatcaccaaa |
848219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 847712 - 847760
Alignment:
| Q |
51 |
tttaatttggattcttattgaaaacttttaatggaccagtaagggtaca |
99 |
Q |
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|||||||| ||| |||||||||||||||| ||||| | ||||||||||| |
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| T |
847712 |
tttaatttagatccttattgaaaacttttgatggatcggtaagggtaca |
847760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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