View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_25 (Length: 351)
Name: NF20308_low_25
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 41746782 - 41747095
Alignment:
| Q |
16 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacatggttcaacacatattttataactcaatctt |
115 |
Q |
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| T |
41746782 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacacggttcaacacatattttataactcaatctt |
41746881 |
T |
|
| Q |
116 |
ttattagttaaaattcatataaatctcatataaatttggtgggactcctatgaattgtaactaataataagaaagaccgtggtaaagagtgtgtttctaa |
215 |
Q |
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| T |
41746882 |
ttattagttaaaattcatctaaatctcatataaatttggtgggactcttatgaattgtaactaataataaaaaagaccgtggtaaagagtgtgtttctaa |
41746981 |
T |
|
| Q |
216 |
cgttattctttattgggtagtttgcgcacactgaaatttcaggttttactaaaacaatacaatatttggtaagaattaaaggtttttatatatcttcaaa |
315 |
Q |
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| T |
41746982 |
cgttattctttattgggtagtttgcgcacactgaaatttcaggttttactaaaacaatacaatattcggtaagaattagaggtttt----tatcttcaat |
41747077 |
T |
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| Q |
316 |
tttgcggagagaagattg |
333 |
Q |
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|||||||||||||||||| |
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| T |
41747078 |
tttgcggagagaagattg |
41747095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 33029563 - 33029523
Alignment:
| Q |
140 |
ctcatataaatttggtgggactcctatgaattgtaactaat |
180 |
Q |
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| T |
33029563 |
ctcatataaatttggtgggacttatatgaattttaactaat |
33029523 |
T |
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