View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_28 (Length: 312)
Name: NF20308_low_28
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_28 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 12844553 - 12844260
Alignment:
| Q |
14 |
gaaccaaagacctatagccttgtgctaaccgtagtatgctcaacatatagtgatagaaacatagccaattgccacaacnnnnnnnnnnnnnnnnntcata |
113 |
Q |
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| T |
12844553 |
gaaccaaagacctatagccttgtgctaaccgtagtatgctcaacatatagtgatagaaacatagccaattgccaaaa-aaaaaaaaaatgaaaaatcata |
12844455 |
T |
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| Q |
114 |
cacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaatnnnnnnnnctgtggaaactctgaaacgaagaaattg |
213 |
Q |
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| T |
12844454 |
gacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaataaaaaaa-ctgtggaaactctgaaacgaagaaattg |
12844356 |
T |
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| Q |
214 |
gttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattcttctgattacagtgatagaaaagaacg |
312 |
Q |
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| T |
12844355 |
gttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttca---ttctgattacagtgatagaaaagaacg |
12844260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 117 - 312
Target Start/End: Original strand, 12861065 - 12861257
Alignment:
| Q |
117 |
aattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaatnnnnnnnnctgtggaaactctgaaacgaagaaattggtt |
216 |
Q |
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| T |
12861065 |
aattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaataaaaaaaactgtggaaactctgaaacgaagaaattggtt |
12861164 |
T |
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| Q |
217 |
gttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgtttctttcattcttctgattacagtgatagaaaagaacg |
312 |
Q |
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| T |
12861165 |
gttacaaccgttttataaataaatcctggcgcgggaaattccaaattgctctaaccgtttctttca---ttctgattacagtgatagaaaagaacg |
12861257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 12860952 - 12861000
Alignment:
| Q |
12 |
aagaaccaaagacctatagccttgtgctaaccgtagtatgctcaacata |
60 |
Q |
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|||||| | |||||||||||| | ||||||||||||||||||||||||| |
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| T |
12860952 |
aagaacgagagacctatagccctttgctaaccgtagtatgctcaacata |
12861000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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