View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_low_3 (Length: 632)

Name: NF20308_low_3
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_low_3
NF20308_low_3
[»] chr6 (18 HSPs)
chr6 (375-620)||(17732491-17732732)
chr6 (375-620)||(6009104-6009344)
chr6 (469-620)||(15347724-15347875)
chr6 (469-620)||(30709792-30709943)
chr6 (252-297)||(6009422-6009467)
chr6 (252-296)||(17732111-17732155)
chr6 (375-423)||(17732234-17732282)
chr6 (252-297)||(17732810-17732855)
chr6 (375-423)||(30710152-30710199)
chr6 (375-449)||(30709708-30709776)
chr6 (252-297)||(30710273-30710318)
chr6 (252-296)||(6008737-6008781)
chr6 (252-292)||(15348196-15348236)
chr6 (265-297)||(30709598-30709630)
chr6 (252-297)||(15347528-15347574)
chr6 (386-423)||(18749024-18749061)
chr6 (380-420)||(6008861-6008901)
chr6 (409-449)||(15347670-15347710)
[»] chr3 (23 HSPs)
chr3 (375-620)||(50837934-50838174)
chr3 (469-620)||(54560325-54560476)
chr3 (469-620)||(47470993-47471143)
chr3 (377-449)||(47470915-47470981)
chr3 (252-297)||(50838253-50838298)
chr3 (252-296)||(1577506-1577550)
chr3 (252-296)||(50837555-50837599)
chr3 (375-423)||(54560682-54560730)
chr3 (252-296)||(54560812-54560856)
chr3 (255-297)||(43546465-43546507)
chr3 (255-297)||(47470793-47470835)
chr3 (252-297)||(47471470-47471515)
chr3 (252-296)||(1576582-1576626)
chr3 (375-423)||(35942660-35942708)
chr3 (375-423)||(50837677-50837724)
chr3 (375-410)||(43546585-43546620)
chr3 (378-423)||(35942324-35942369)
chr3 (409-449)||(54560271-54560311)
chr3 (252-295)||(28539353-28539395)
chr3 (252-291)||(50381948-50381987)
chr3 (252-294)||(35942774-35942816)
chr3 (252-297)||(54560129-54560175)
chr3 (375-420)||(47471352-47471396)
[»] chr5 (22 HSPs)
chr5 (469-620)||(5348015-5348166)
chr5 (17-155)||(34086526-34086664)
chr5 (469-620)||(36429581-36429732)
chr5 (521-593)||(26380043-26380115)
chr5 (252-296)||(5348501-5348545)
chr5 (255-297)||(36429381-36429423)
chr5 (252-297)||(7491347-7491392)
chr5 (252-297)||(36430060-36430105)
chr5 (252-297)||(36681845-36681890)
chr5 (375-423)||(5348372-5348419)
chr5 (375-423)||(7491466-7491514)
chr5 (252-296)||(31808373-31808417)
chr5 (375-423)||(36429938-36429986)
chr5 (375-449)||(36429501-36429569)
chr5 (375-427)||(14278109-14278162)
chr5 (252-297)||(29500105-29500150)
chr5 (409-449)||(5347961-5348001)
chr5 (384-420)||(29500236-29500272)
chr5 (380-423)||(29500584-29500627)
chr5 (380-423)||(31808502-31808545)
chr5 (252-297)||(5347819-5347865)
chr5 (253-297)||(7493203-7493247)
[»] chr1 (11 HSPs)
chr1 (375-620)||(47445457-47445691)
chr1 (381-426)||(36475505-36475550)
chr1 (375-423)||(36475842-36475890)
chr1 (375-423)||(47445200-47445248)
chr1 (252-296)||(36475966-36476010)
chr1 (380-423)||(27585864-27585907)
chr1 (252-295)||(36475369-36475411)
chr1 (381-423)||(27585523-27585565)
chr1 (252-294)||(47445084-47445126)
chr1 (252-297)||(47445769-47445814)
chr1 (252-296)||(27585385-27585429)
[»] chr8 (11 HSPs)
chr8 (469-620)||(14790969-14791120)
chr8 (469-620)||(20111961-20112113)
chr8 (377-449)||(20112123-20112189)
chr8 (375-423)||(14791326-14791374)
chr8 (252-296)||(14791449-14791493)
chr8 (252-297)||(20112271-20112315)
chr8 (469-513)||(18308867-18308911)
chr8 (253-294)||(20111588-20111629)
chr8 (409-449)||(14790911-14790951)
chr8 (252-297)||(14790768-14790814)
chr8 (380-420)||(20111715-20111755)
[»] scaffold0102 (4 HSPs)
scaffold0102 (375-620)||(32571-32802)
scaffold0102 (252-297)||(33138-33183)
scaffold0102 (380-423)||(33011-33054)
scaffold0102 (252-297)||(32448-32493)
[»] chr7 (12 HSPs)
chr7 (469-620)||(36067614-36067765)
chr7 (17-145)||(13818474-13818602)
chr7 (375-423)||(36067974-36068022)
chr7 (252-297)||(30480689-30480735)
chr7 (386-446)||(36067524-36067581)
chr7 (386-427)||(3987103-3987144)
chr7 (252-297)||(36068102-36068146)
chr7 (252-291)||(32390891-32390930)
chr7 (252-289)||(3987239-3987275)
chr7 (386-419)||(30480579-30480612)
chr7 (253-297)||(36067392-36067435)
chr7 (252-292)||(41589278-41589317)
[»] chr2 (12 HSPs)
chr2 (469-604)||(4592917-4593052)
chr2 (485-620)||(10256012-10256147)
chr2 (375-524)||(10255888-10256027)
chr2 (255-296)||(4593399-4593440)
chr2 (375-423)||(4593268-4593316)
chr2 (375-423)||(10256356-10256404)
chr2 (255-297)||(10255768-10255810)
chr2 (409-449)||(4592865-4592905)
chr2 (252-296)||(10256485-10256529)
chr2 (387-423)||(33003114-33003150)
chr2 (252-297)||(4592723-4592769)
chr2 (387-427)||(33003593-33003633)
[»] chr4 (17 HSPs)
chr4 (469-620)||(27455219-27455370)
chr4 (509-620)||(49681739-49681850)
chr4 (375-449)||(49681878-49681949)
chr4 (252-296)||(620566-620610)
chr4 (252-296)||(621531-621575)
chr4 (255-297)||(27455015-27455057)
chr4 (381-449)||(27455143-27455205)
chr4 (252-297)||(27455708-27455753)
chr4 (376-420)||(21225014-21225058)
chr4 (375-423)||(49681476-49681524)
chr4 (252-291)||(11147841-11147880)
chr4 (385-423)||(21224479-21224517)
chr4 (382-423)||(27455579-27455620)
chr4 (253-297)||(21225895-21225938)
chr4 (380-420)||(21226405-21226445)
chr4 (266-296)||(49681372-49681402)
chr4 (253-294)||(21226521-21226561)
[»] scaffold0169 (1 HSPs)
scaffold0169 (254-291)||(27403-27439)
[»] scaffold0020 (1 HSPs)
scaffold0020 (252-289)||(2043-2080)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 7e-97; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 375 - 620
Target Start/End: Complemental strand, 17732732 - 17732491
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgatnnnnnnnnnnnnnnnnnnntgtttg 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||    
T  17732732 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgattctctctctctctct----tgtttg 17732637  T
Q  475 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17732636 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggtt 17732537  T
Q  575 atgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17732536 atgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 17732491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 375 - 620
Target Start/End: Complemental strand, 6009344 - 6009104
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgatnnnnnnnnnnnnnnnnnnntgtttg 474  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||                   ||||||    
T  6009344 tccagaaaaattttaagaaacaacaaccattaacaacaacatcatcatcaaca---tcacacactttctaatgattctctctctctctctct--tgtttg 6009250  T
Q  475 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||    
T  6009249 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaagggtt 6009150  T
Q  575 atgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  6009149 atgatgaatagcatgaacaccaacatcaacatcaatgtttcttctc 6009104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 15347724 - 15347875
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  15347724 tgtttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 15347823  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15347824 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctc 15347875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 30709792 - 30709943
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||    
T  30709792 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaaca 30709891  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  30709892 aggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctc 30709943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 6009467 - 6009422
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  6009467 gttagtcaattatccctctccgtttgttttggctgttaaatgacta 6009422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 17732111 - 17732155
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  17732111 gttagtcaattacccccctccgtttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 17732234 - 17732282
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17732234 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 17732282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 17732855 - 17732810
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  17732855 gttagccaattacccccctccgtttgttttggctgttaaatgacta 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 30710199 - 30710152
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30710199 tccagaaaaaatt-aagaaacaacaaccattaacaacatcatcatcatc 30710152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 449
Target Start/End: Original strand, 30709708 - 30709776
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    |||||||||||||||| ||||||||| |||||||||      ||||||||||||| ||||||||||| |||||||    
T  30709708 tccagaaaaaatttaaaaaacaacaatcattaacaa------catcatcatcaacatcacacactttataatgat 30709776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 30710318 - 30710273
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||| || |||||||||||||||||||||||||    
T  30710318 gttagtcaattacccccatctgtttgttttggctgttaaatgacta 30710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 6008737 - 6008781
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||| | |||||||| |||||||||||||||||||||||    
T  6008737 gttagtcaatcacccccctccatttgttttggctgttaaatgact 6008781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 15348236 - 15348196
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaat 292  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  15348236 gttagtcaattacccccttccgtttgttttggctgttaaat 15348196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 30709598 - 30709630
Alignment:
Q  265 ccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||||||||||||||||||||||||    
T  30709598 ccccctccgtttgttttggctgttaaatgacta 30709630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 15347528 - 15347574
Alignment:
Q  252 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  15347528 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 15347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 423
Target Start/End: Original strand, 18749024 - 18749061
Alignment:
Q  386 tttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  18749024 tttaagaaacaacaatcatcaacaacaacatcatcatc 18749061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 6008861 - 6008901
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatc 420  Q
    |||||| ||||||||||||||||||||||| || |||||||    
T  6008861 aaaaaaattaagaaacaacaaccattaacatcatcatcatc 6008901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 15347670 - 15347710
Alignment:
Q  409 aacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||| ||||||||||||| || ||||||||||||||||    
T  15347670 aacaacaacatcatcatcaacatcgcacactttctaatgat 15347710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 375 - 620
Target Start/End: Complemental strand, 50838174 - 50837934
Alignment:
Q  375 tccagaaaaaatttaa-gaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgatnnnnnnnnnnnnnnnnnnntgttt 473  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||    
T  50838174 tccagaaaaaatttaaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgattctctctctctct------tgttt 50838081  T
Q  474 gttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggt 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50838080 gttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggt 50837981  T
Q  574 tatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50837980 tatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 50837934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 54560325 - 54560476
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  54560325 tgtttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 54560424  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54560425 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctc 54560476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 47470993 - 47471143
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  47470993 tgtttgttaccttcttgaattaatcaacaacaaccctttggaat-catcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaaca 47471091  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||| |||| |||||||||||||||| ||||||||||| ||||| ||||||||    
T  47471092 aggtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctc 47471143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 449
Target Start/End: Original strand, 47470915 - 47470981
Alignment:
Q  377 cagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||| |||||||    
T  47470915 cagaaaaaatttaagaaacaacaaccattaacaa------catcatcatcaacatcacacactttataatgat 47470981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 50838298 - 50838253
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  50838298 gttagtcaattacccccctccgtttgttttggctgttaaatgacta 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 1577550 - 1577506
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  1577550 gttagtcaattacccccctccgtttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 50837555 - 50837599
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  50837555 gttagtcaattacccccctccgtttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 54560730 - 54560682
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  54560730 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 54560682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 54560856 - 54560812
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  54560856 gttagtcaattacccccctccgtttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 43546465 - 43546507
Alignment:
Q  255 agtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  43546465 agtcaattacccccctccgtttgttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 47470793 - 47470835
Alignment:
Q  255 agtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  47470793 agtcaattacccccctccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 47471515 - 47471470
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  47471515 gttagtcaattacccccctctgtttgttttggctgttaaatgacta 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 1576582 - 1576626
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  1576582 gttagtcaattacccccctccgtttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 35942708 - 35942660
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| || |||||||    
T  35942708 tccagaaaaaaattaagaaacaacaaccattaacaacatcaccatcatc 35942660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 50837677 - 50837724
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  50837677 tccagaaaaaatt-aagaaacaacaaccattaacaacatcatcatcatc 50837724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 43546585 - 43546620
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaa 410  Q
    ||||||||||||||||||||||||||||||||||||    
T  43546585 tccagaaaaaatttaagaaacaacaaccattaacaa 43546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 35942324 - 35942369
Alignment:
Q  378 agaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||    
T  35942324 agaaaaaatttaagaagcaacaactattaacaacatcatcatcatc 35942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 54560271 - 54560311
Alignment:
Q  409 aacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  54560271 aacaacaacatcatcatcaacatcacacactttctaatgat 54560311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 28539395 - 28539353
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgac 295  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  28539395 gttagtcaattatcctc-tccgtttgttttggctgttaaatgac 28539353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 50381948 - 50381987
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaa 291  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  50381948 gttagtcaattacccccctctgtttgttttggctgttaaa 50381987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 35942816 - 35942774
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatga 294  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  35942816 gttagtcaattacccccctccatttgttttggttgttaaatga 35942774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 54560129 - 54560175
Alignment:
Q  252 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  54560129 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 54560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 47471396 - 47471352
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatc 420  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||    
T  47471396 tccagaaaaaatt-aagaaacaacaaccattaacatcatcatcatc 47471352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 5e-73; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 5348015 - 5348166
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  5348015 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 5348114  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5348115 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctc 5348166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 34086526 - 34086664
Alignment:
Q  17 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086526 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggat 34086625  T
Q  117 cagcctcatgatgagataggatagaccacatataattcg 155  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34086626 cagcctcatgatgagataggatagaccacatataattcg 34086664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 36429581 - 36429732
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||    
T  36429581 tgtttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaaca 36429680  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  36429681 aggtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctc 36429732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 521 - 593
Target Start/End: Original strand, 26380043 - 26380115
Alignment:
Q  521 aacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggttatgatgaatagcatgaaca 593  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||    
T  26380043 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaaca 26380115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 5348545 - 5348501
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5348545 gttagtcaattacccccctccgtttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 36429381 - 36429423
Alignment:
Q  255 agtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  36429381 agtcaattacccccctccgtttgttttggctgttaaatgacta 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 7491347 - 7491392
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  7491347 gttagtcaattaccccccttcgtttgttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 36430105 - 36430060
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  36430105 gttagtcaattacccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 36681890 - 36681845
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||    
T  36681890 gttagtcaattacccccctccgtttgttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 5348419 - 5348372
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5348419 tccagaaaaaatt-aagaaacaacaaccattaacaacatcatcatcatc 5348372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 7491466 - 7491514
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  7491466 tccagaaaaaaattaagaaacaataaccattaacaacatcatcatcatc 7491514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 31808373 - 31808417
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  31808373 gttagtcaattacccccctcagtttgttttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 36429986 - 36429938
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  36429986 tccagaaaaaaattaagaaacagcaaccattaacaacatcatcatcatc 36429938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 449
Target Start/End: Original strand, 36429501 - 36429569
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    |||||||||| |||||||||||||||||||||||||      ||||||||| ||| ||||||||||| |||||||    
T  36429501 tccagaaaaattttaagaaacaacaaccattaacaa------catcatcattaacatcacacactttataatgat 36429569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 14278109 - 14278162
Alignment:
Q  375 tccagaaaa-aatttaagaaacaacaaccattaacaacaacatcatcatcatca 427  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||||||    
T  14278109 tccagaaaataatgtaagaaacaacaacaatcaacaacaacatcatcatcatca 14278162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 29500105 - 29500150
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  29500105 gttagtcaattacccctctccgtttgttttggctcttaaatgacta 29500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 5347961 - 5348001
Alignment:
Q  409 aacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  5347961 aacaacaacatcatcatcaacatcacacactttctaatgat 5348001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 29500236 - 29500272
Alignment:
Q  384 aatttaagaaacaacaaccattaacaacaacatcatc 420  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29500236 aatttaagaaacaacaaccattaacaacatcatcatc 29500272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 29500627 - 29500584
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||    
T  29500627 aaaatatttaagaaataacaaccattaacaacatcatcatcatc 29500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 31808502 - 31808545
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||    
T  31808502 aaaaaaattaagatacaacaaccattaacaacatcatcatcatc 31808545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 5347819 - 5347865
Alignment:
Q  252 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  5347819 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 5347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 7493247 - 7493203
Alignment:
Q  253 ttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||||  |||| ||||||||||| |||||||||||||    
T  7493247 ttagtcaattatcttcctctgtttgttttggttgttaaatgacta 7493203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 375 - 620
Target Start/End: Complemental strand, 47445691 - 47445457
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgatnnnnnnnnnnnnnnnnnnntgtttg 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||| |||||||||||                   ||||||    
T  47445691 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcaaca---tcacacattttctaatgattctctctctct--------tgtttg 47445603  T
Q  475 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||    
T  47445602 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggttt 47445503  T
Q  575 atgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    || |||||||||||||||| ||||||||||||||||| ||||||||    
T  47445502 ataatgaatagcatgaacaacaacatcaacagcaacggttcttctc 47445457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Original strand, 36475505 - 36475550
Alignment:
Q  381 aaaaatttaagaaacaacaaccattaacaacaacatcatcatcatc 426  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  36475505 aaaaatttaagaaacaacaaccattaacaacatcatcatcatcatc 36475550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 36475890 - 36475842
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  36475890 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 36475842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 47445200 - 47445248
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  47445200 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 47445248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 36476010 - 36475966
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  36476010 gttagtcaattacccccctccatttgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 27585907 - 27585864
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  27585907 aaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 27585864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 36475369 - 36475411
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgac 295  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  36475369 gttagtcaatta-ccccctccgtttgttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 27585523 - 27585565
Alignment:
Q  381 aaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  27585523 aaaaatttaagaaacaataaccattaacaacatcatcatcatc 27585565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 47445084 - 47445126
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatga 294  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  47445084 gttagtcaattacccccctccgtttattttggctgttaaatga 47445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 47445814 - 47445769
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||    
T  47445814 gttagtcaattacccccctccatttgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 27585385 - 27585429
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    ||||||| |||| |||| | |||||||||||||||||||||||||    
T  27585385 gttagtcgattacccccattcgtttgttttggctgttaaatgact 27585429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 14790969 - 14791120
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  14790969 tgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaaca 14791068  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14791069 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctc 14791120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 469 - 620
Target Start/End: Complemental strand, 20112113 - 20111961
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  20112113 tgtttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaaca 20112014  T
Q  569 agg-gttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    |||  ||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  20112013 aggttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctc 20111961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 20112189 - 20112123
Alignment:
Q  377 cagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||| |||||||    
T  20112189 cagaaaaaatttaagaaacaacaaccattaacaa------catcatcatcaacatcacacactttataatgat 20112123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 14791374 - 14791326
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  14791374 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 14791326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 14791493 - 14791449
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  14791493 gttagtcaattacccccctccgtttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 20112315 - 20112271
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  20112315 gttagtcaatta-ccccctccgtttgttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 18308867 - 18308911
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaatt 513  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  18308867 tgtttgttaccatcttgaattaatcaacaacaactctttggaatt 18308911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 20111588 - 20111629
Alignment:
Q  253 ttagtcaattatccccctccgtttgttttggctgttaaatga 294  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  20111588 ttagtcaattacccccctccgtttgttttagctgttaaatga 20111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 14790911 - 14790951
Alignment:
Q  409 aacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  14790911 aacaacaacatcatcatcaacatcacacactttctaatgat 14790951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 14790768 - 14790814
Alignment:
Q  252 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  14790768 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 14790814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 20111715 - 20111755
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatc 420  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  20111715 aaaaaaattaagaaacaacaacgattaacaacatcatcatc 20111755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 375 - 620
Target Start/End: Original strand, 32571 - 32802
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgatnnnnnnnnnnnnnnnnnnntgtttg 474  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||| |||||||||||||||||||                   ||||||    
T  32571 tccagaaaaaatttaagaaacaacaaccattaacaaca------tcatcatcaacatcacacactttctaatgattctctctctct--------tgtttg 32656  T
Q  475 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 574  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||    
T  32657 ttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggttt 32756  T
Q  575 atgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  32757 atgatgaatagcatgaacaacaacatcaacagcaacggttcttctc 32802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 33183 - 33138
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  33183 gttagtcaattacccccctccgtttgttttggctgttaaatgacta 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 33054 - 33011
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  33054 aaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 33011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 32448 - 32493
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||    
T  32448 gttagtcaataacccctctccgtttgttttggctgttaaatgacta 32493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 36067614 - 36067765
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36067614 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaaca 36067713  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||| ||||||||||||||||||||| |||||||||||  |||| ||||||||    
T  36067714 aggtttatgatgaatagcatgaacaacaacatcaacaataacggttcttctc 36067765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 13818602 - 13818474
Alignment:
Q  17 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||    
T  13818602 acattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacatagtgttggtttcggat 13818503  T
Q  117 cagcctcatgatgagataggatagaccac 145  Q
    || |||||||||| |||||||||||||||    
T  13818502 caacctcatgatgggataggatagaccac 13818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 36068022 - 36067974
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  36068022 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 36067974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 30480735 - 30480689
Alignment:
Q  252 gttagtcaattatccccctccgttt-gttttggctgttaaatgacta 297  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  30480735 gttagtcaattatccccctccgtttggttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 36067524 - 36067581
Alignment:
Q  386 tttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaat 446  Q
    ||||||||||||||||||||||||||||   ||||||| ||||| ||||||||||||||||    
T  36067524 tttaagaaacaacaaccattaacaacaa---catcatcttcaacatcacacactttctaat 36067581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 3987144 - 3987103
Alignment:
Q  386 tttaagaaacaacaaccattaacaacaacatcatcatcatca 427  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  3987144 tttaagaaacaacaaccattaacaatatcatcatcatcatca 3987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 36068146 - 36068102
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  36068146 gttagtcaattacccccctccgtttgttttggct-ttaaatgacta 36068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 32390930 - 32390891
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaa 291  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  32390930 gttagtcaattacccccctccgtttgttttgactgttaaa 32390891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 3987275 - 3987239
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgtta 289  Q
    |||||||||||| |||||||||||||||||||||||||    
T  3987275 gttagtcaatta-ccccctccgtttgttttggctgtta 3987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 30480612 - 30480579
Alignment:
Q  386 tttaagaaacaacaaccattaacaacaacatcat 419  Q
    ||||||||||||||||||||||||||| ||||||    
T  30480612 tttaagaaacaacaaccattaacaacatcatcat 30480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 36067392 - 36067435
Alignment:
Q  253 ttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  36067392 ttagtcaatta-ccccctccgtttattttggccgttaaatgacta 36067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 41589278 - 41589317
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaat 292  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  41589278 gttagtcaatta-ccccctctgtttgttttggctgttaaat 41589317  T

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Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 469 - 604
Target Start/End: Original strand, 4592917 - 4593052
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  4592917 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 4593016  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaac 604  Q
    ||||||||||||||||||||||||||||||||||||    
T  4593017 agggttatgatgaatagcatgaacaccaacatcaac 4593052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 485 - 620
Target Start/End: Original strand, 10256012 - 10256147
Alignment:
Q  485 gaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggttatgatgaata 584  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  10256012 gaattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata 10256111  T
Q  585 gcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||||||||| ||||||||||||||||| ||||||||    
T  10256112 gcatgaacaacaacatcaacagcaacggttcttctc 10256147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 375 - 524
Target Start/End: Original strand, 10255888 - 10256027
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgatnnnnnnnnnnnnnnnnnnntgtttg 474  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||| ||||||||||| |||||||                   ||||||    
T  10255888 tccagaaaaaatttaagaaacaacaaccattaacaaca------tcatcatcaacatcacacactttataatgattctctctctctctct----tgtttg 10255977  T
Q  475 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255978 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 10256027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 4593440 - 4593399
Alignment:
Q  255 agtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4593440 agtcaattatccccctccgtttgttttggctgttaaatgact 4593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 4593316 - 4593268
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  4593316 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 4593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 10256404 - 10256356
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  10256404 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 10256356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 10255768 - 10255810
Alignment:
Q  255 agtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  10255768 agtcaattacccccctccgtttgttttggctgttaaatgacta 10255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 4592865 - 4592905
Alignment:
Q  409 aacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  4592865 aacaacaacatcatcatcaacatcacacactttctaatgat 4592905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 10256529 - 10256485
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  10256529 gttagtcaattaccccgctccgtttgttttggctattaaatgact 10256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 33003114 - 33003150
Alignment:
Q  387 ttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||||||||||||||||||||||||| ||||||||||    
T  33003114 ttaagaaacaacaaccattaacaacatcatcatcatc 33003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 4592723 - 4592769
Alignment:
Q  252 gttagtcaattatccccct-ccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  4592723 gttagtcaattaccccccttccgtttgttttggctgttaagtgacta 4592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 33003633 - 33003593
Alignment:
Q  387 ttaagaaacaacaaccattaacaacaacatcatcatcatca 427  Q
    |||||||||||||| ||||| ||||| ||||||||||||||    
T  33003633 ttaagaaacaacaatcattatcaacatcatcatcatcatca 33003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 469 - 620
Target Start/End: Original strand, 27455219 - 27455370
Alignment:
Q  469 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  27455219 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaaca 27455318  T
Q  569 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctc 620  Q
    ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  27455319 aggtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctc 27455370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 509 - 620
Target Start/End: Complemental strand, 49681850 - 49681739
Alignment:
Q  509 gaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggttatgatgaatagcatgaacaccaacatcaacagca 608  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||    
T  49681850 gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca 49681751  T
Q  609 acgtttcttctc 620  Q
    ||| ||||||||    
T  49681750 acgattcttctc 49681739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 449
Target Start/End: Complemental strand, 49681949 - 49681878
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||    
T  49681949 tccataaaaattttaagaaacaacaaccattaacaacaacatcatc---atcaacatcacacactttctaatgat 49681878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 620566 - 620610
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  620566 gttagtcaattacccccctccgtttgttttggctgttaaatgact 620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 621575 - 621531
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  621575 gttagtcaattacccccctccgtttgttttggctgttaaatgact 621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 27455015 - 27455057
Alignment:
Q  255 agtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  27455015 agtcaattacccccctccgtttgttttggctgttaaatgacta 27455057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 27455143 - 27455205
Alignment:
Q  381 aaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgat 449  Q
    ||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||| |||||||    
T  27455143 aaaaatttaagaaacaacaaccattaacaa------catcatcatcaacatcacacactttataatgat 27455205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 27455753 - 27455708
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||    
T  27455753 gttagtcaattacccccctccgtttgttttggcagttaaatgacta 27455708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 21225058 - 21225014
Alignment:
Q  376 ccagaaaaaatttaagaaacaacaaccattaacaacaacatcatc 420  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  21225058 ccagaaaaaaattaagaaacaacaaccattaacaacatcatcatc 21225014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 49681476 - 49681524
Alignment:
Q  375 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  49681476 tccagaaaaaaattaagaaacaacaaccattaacaacatcattatcatc 49681524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 11147841 - 11147880
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgttaaa 291  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11147841 gttagtcaattacccccctccgtttgttttggctgttaaa 11147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 21224479 - 21224517
Alignment:
Q  385 atttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  21224479 atttaagaaacaacaaccattaacaacatcatcatcatc 21224517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 27455620 - 27455579
Alignment:
Q  382 aaaatttaagaaacaacaaccattaacaacaacatcatcatc 423  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  27455620 aaaaattaagaaacaacaaccattaacaacatcatcatcatc 27455579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 21225895 - 21225938
Alignment:
Q  253 ttagtcaattatccccctccgtttgttttggctgttaaatgacta 297  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||    
T  21225895 ttagtcaatta-ccctctccgtttgttttggctgttaaatgacta 21225938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 21226445 - 21226405
Alignment:
Q  380 aaaaaatttaagaaacaacaaccattaacaacaacatcatc 420  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  21226445 aaaaaaattaagaaacaacaaccattaacaacatcatcatc 21226405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 296
Target Start/End: Original strand, 49681372 - 49681402
Alignment:
Q  266 cccctccgtttgttttggctgttaaatgact 296  Q
    |||||||||||||||||||||||||||||||    
T  49681372 cccctccgtttgttttggctgttaaatgact 49681402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 21226561 - 21226521
Alignment:
Q  253 ttagtcaattatccccctccgtttgttttggctgttaaatga 294  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  21226561 ttagtcaatta-ccccctccgtttgttttggctattaaatga 21226521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 27439 - 27403
Alignment:
Q  254 tagtcaattatccccctccgtttgttttggctgttaaa 291  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27439 tagtcaatta-ccccctccgtttgttttggctgttaaa 27403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 2043 - 2080
Alignment:
Q  252 gttagtcaattatccccctccgtttgttttggctgtta 289  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  2043 gttagtcaattacccccctccgtctgttttggctgtta 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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