View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_31 (Length: 282)
Name: NF20308_low_31
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 12861628 - 12861361
Alignment:
| Q |
2 |
ggatgtcgaagaatattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcgg |
101 |
Q |
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| T |
12861628 |
ggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcgg |
12861529 |
T |
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| Q |
102 |
cgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcggaggtattgaaggtgatgatcgagcattgtacggag |
201 |
Q |
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| T |
12861528 |
cgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcggaggtattgaaggtgatgatcgagcatagtacggag |
12861429 |
T |
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| Q |
202 |
ccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcatgaatgt |
269 |
Q |
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| T |
12861428 |
ccagtttgttacaacggaagcagtggcggtaacggtgacttcgaagttgatttggctttcgtgaatgt |
12861361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 12843868 - 12844009
Alignment:
| Q |
17 |
ttgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggt |
116 |
Q |
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| T |
12843868 |
ttgcagagactaaccggaatcatatcggcgagagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggcgggaggatcaaggt |
12843967 |
T |
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| Q |
117 |
tgcggttagtccattgaacgccgaggccgacaacaagattac |
158 |
Q |
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| T |
12843968 |
tgccgggagtccattgaacgccaaggccgacaatgagattac |
12844009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 12844050 - 12844156
Alignment:
| Q |
163 |
gcggaggtattgaaggtgatgatcgagcattgtacggagccagtttgttacgacggaagcagtggcggtaacggtgacttcgaagttgatttggctttca |
262 |
Q |
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| T |
12844050 |
gcggagggattgaaaatgatgattgagcatactttggagccagtttgttacgacggaagctgtggcggtaacggtgacttcgaagttgatttggctttca |
12844149 |
T |
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| Q |
263 |
tgaatgt |
269 |
Q |
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| T |
12844150 |
tgaatgt |
12844156 |
T |
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