View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20308_low_33 (Length: 279)

Name: NF20308_low_33
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20308_low_33
NF20308_low_33
[»] chr1 (5 HSPs)
chr1 (8-227)||(48471646-48471862)
chr1 (79-188)||(3621976-3622082)
chr1 (134-188)||(48470943-48470997)
chr1 (219-265)||(48472166-48472212)
chr1 (134-188)||(3622591-3622644)
[»] chr5 (4 HSPs)
chr5 (14-188)||(31111224-31111395)
chr5 (134-188)||(2458293-2458347)
chr5 (79-188)||(2457698-2457804)
chr5 (134-188)||(31110541-31110595)
[»] chr3 (6 HSPs)
chr3 (14-188)||(53145310-53145475)
chr3 (79-188)||(37104407-37104513)
chr3 (134-188)||(21811934-21811988)
chr3 (134-188)||(37105016-37105070)
chr3 (134-188)||(53144621-53144675)
chr3 (32-148)||(21812434-21812553)
[»] chr4 (5 HSPs)
chr4 (14-188)||(55010898-55011063)
chr4 (79-188)||(37275700-37275806)
chr4 (134-188)||(37275143-37275197)
chr4 (134-188)||(55011687-55011741)
chr4 (127-182)||(198944-198999)
[»] chr2 (1 HSPs)
chr2 (115-188)||(2650284-2650357)
[»] chr8 (3 HSPs)
chr8 (144-188)||(32666698-32666742)
chr8 (218-261)||(44972017-44972060)
chr8 (34-75)||(32666804-32666845)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 48471646 - 48471862
Alignment:
Q  8 gatgaagatgaagatgatgagtagaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaa 107  Q
    |||||| ||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48471646 gatgaatatgaagatggtgactagaaaagatttaggctgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaga 48471745  T
Q  108 ggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggtttnnnnnnncttttccatgta 207  Q
    ||||   ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||       |||| |||||||    
T  48471746 ggtt---gaagacaataaaaagaaagatatagtgtggacaatttacagtaagattaatgttccctttcaatccagtggtttaaaaaaactttcccatgta 48471842  T
Q  208 aaatgccaccaaaaataaat 227  Q
    ||||||||||||||||||||    
T  48471843 aaatgccaccaaaaataaat 48471862  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 3622082 - 3621976
Alignment:
Q  79 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 178  Q
    |||||||||||||||||||  |||||| ||||||||||   |||| | |||||||||||||||| |||||  |||  ||| || |||||||||||| |||    
T  3622082 ggtggtgggtctattggtgtctcatgagaggttgaaga---caatgagaagaaagatatagtgtagacagcctatgataaaatcaatgttcccttttaat 3621986  T
Q  179 ctagtggttt 188  Q
    ||| ||||||    
T  3621985 ctaatggttt 3621976  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 48470997 - 48470943
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    ||||||||| |||||| ||| |||||||||||||||| ||| |||||||||||||    
T  48470997 atatagtgtagacagtctatggtaagattaatgttccattttaatctagtggttt 48470943  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 48472166 - 48472212
Alignment:
Q  219 aaaataaatcctttcgatatgtcaatgacataacaaaaggttcataa 265  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  48472166 aaaataaatcctttcgatatgataacgacataacaaaaggttcataa 48472212  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 3622591 - 3622644
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||| ||||||||||| |||||| ||||| |||||| ||||||    
T  3622591 atatagtgtggacagtctatagtaagatcaatgtt-ccttttaatctaatggttt 3622644  T

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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 31111224 - 31111395
Alignment:
Q  14 gatgaagatgatgagtagaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttga 113  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||      
T  31111224 gatgaagatgatgagcagaaaagatttaggctgaaatcaatggtttaggggtggttcttggaatcggtggtgggtctattggtggttcatgagaggtt-- 31111321  T
Q  114 agaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31111322 -gaagacaataaaaagaaagatatagtgtggacagttgatagtaagattaatgttccctttcaatctagtggttt 31111395  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 2458293 - 2458347
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  2458293 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 2458347  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 2457804 - 2457698
Alignment:
Q  79 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 178  Q
    |||||||||||||||||||  |||||| ||||||||||   |||| | ||||||||||||||| ||||||  |||  ||| || |||||||||||| |||    
T  2457804 ggtggtgggtctattggtgtctcatgagaggttgaaga---caatgagaagaaagatatagtgcggacagcctatgataaaatcaatgttcccttttaat 2457708  T
Q  179 ctagtggttt 188  Q
     || ||||||    
T  2457707 ttaatggttt 2457698  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 31110595 - 31110541
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    ||||| ||| |||||| ||| |||||||||||||||||||| |||||||||||||    
T  31110595 atataatgtagacagtctatggtaagattaatgttcccttttaatctagtggttt 31110541  T

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Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 53145310 - 53145475
Alignment:
Q  14 gatgaagatgatgagtagaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttga 113  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||             
T  53145310 gatgaagatgatgagcagaaaagatttaggctgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtggttcatg--------- 53145400  T
Q  114 agaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53145401 agaagacaataaaaagaaagatatagtgtggatagtttatagtaagattaatgttccctttcaatctagtggttt 53145475  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 37104513 - 37104407
Alignment:
Q  79 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 178  Q
    |||||||||||||||||||  |||||| |||||   ||||||||| | |||||||||||||||||||||   |||  ||| || |||||||||||| |||    
T  37104513 ggtggtgggtctattggtgtctcatgagaggtt---gaagacaatgagaagaaagatatagtgtggacaacctatgataaaatcaatgttcccttttaat 37104417  T
Q  179 ctagtggttt 188  Q
    ||| ||||||    
T  37104416 ctaatggttt 37104407  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 21811988 - 21811934
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  21811988 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 21811934  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 37105016 - 37105070
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  37105016 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 37105070  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 53144675 - 53144621
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    ||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||    
T  53144675 atatagtgtagacagtctatggtaagattaatgttcccttttaatctagtggttt 53144621  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 21812434 - 21812553
Alignment:
Q  32 aaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggt------ggtgggtctattggtgcttcatgaaaggttgaagaagacaataa 125  Q
    |||||||||||| |||||||||| |||||  ||||| ||||||| |||||      ||||||||||||||||  |||||| |||||   ||||||||| |    
T  21812434 aaaagatttaggctgaaatcaattgtttaatggtggttcttggagtcggttttggtggtgggtctattggtgtctcatgagaggtt---gaagacaatga 21812530  T
Q  126 aaagaaagatatagtgtggacag 148  Q
     |||||||||||||| |||||||    
T  21812531 gaagaaagatatagtatggacag 21812553  T

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Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 55011063 - 55010898
Alignment:
Q  14 gatgaagatgatgagtagaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttga 113  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||             
T  55011063 gatgaagatgatgagcagaaaagatttaggctgaaatcaatggtttagggttgactcttggaatcggtggtgggtctattggtggttcatg--------- 55010973  T
Q  114 agaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55010972 agaagacaataaaaagaaagatatagtgtggatagtttatagtaagattaatgttccctttcaatctagtggttt 55010898  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 37275700 - 37275806
Alignment:
Q  79 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 178  Q
    |||||||||||||||||||  | |||| ||||||||||   |||| | |||||||||||||| |||||||| |||  ||| || |||||||||||| |||    
T  37275700 ggtggtgggtctattggtgtcttatgagaggttgaaga---caatgagaagaaagatatagtatggacagtctatgataaaatcaatgttcccttttaat 37275796  T
Q  179 ctagtggttt 188  Q
    ||| ||||||    
T  37275797 ctaatggttt 37275806  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 37275197 - 37275143
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  37275197 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 37275143  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 55011687 - 55011741
Alignment:
Q  134 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    ||||||| | |||||| |||||||||||||||||||||||| |||||||||||||    
T  55011687 atatagtatagacagtctatagtaagattaatgttcccttttaatctagtggttt 55011741  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 198944 - 198999
Alignment:
Q  127 aagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctag 182  Q
    ||||||||||||||||||| || ||||||||| || |||||||||| || ||||||    
T  198944 aagaaagatatagtgtggatagcttatagtaaaatcaatgttccctatccatctag 198999  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 2650357 - 2650284
Alignment:
Q  115 gaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    ||||||||| | ||||||||||||||||||| ||  |||  ||| ||||||||||||||| |||||| ||||||    
T  2650357 gaagacaatgagaagaaagatatagtgtggatagcctatgataaaattaatgttcccttttaatctaatggttt 2650284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 32666742 - 32666698
Alignment:
Q  144 gacagtttatagtaagattaatgttccctttcaatctagtggttt 188  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||    
T  32666742 gacagtctatggtaagattaatgttcccttttaatctagtggttt 32666698  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 44972017 - 44972060
Alignment:
Q  218 aaaaataaatcctttcgatatgtcaatgacataacaaaaggttc 261  Q
    ||||| |||||||||||||||||| | |||||||||||||||||    
T  44972017 aaaaaaaaatcctttcgatatgtcgaagacataacaaaaggttc 44972060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 32666845 - 32666804
Alignment:
Q  34 aagatttagggtgaaatcaatggtttaggggtggctcttgga 75  Q
    |||||||||| |||||||| | ||||||||||||||||||||    
T  32666845 aagatttaggctgaaatcatttgtttaggggtggctcttgga 32666804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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