View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_37 (Length: 258)
Name: NF20308_low_37
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 35312020 - 35312234
Alignment:
| Q |
16 |
atgaaactggattgaattaaacgtatactatagactagtacaaaattcgtataagtgtagaaaagtccaaaaatctttatgagtagtatgtgtgtgctag |
115 |
Q |
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| T |
35312020 |
atgaaactggattgaattaaacgtatactatagactagtacaaaattcgtataagtgtagaaaagtccaaaaatctttatgagtagtatgtgtgtgctag |
35312119 |
T |
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| Q |
116 |
gtaaaaatacttgatgaatcacgtagtaatgaagtagtagtagtacgtatgaaatgcaaaagtaaaagctgctaaaatttgaaatgcagttccaaccgtg |
215 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35312120 |
gtaaaaatacttgatgaatc-----------aagtagtagtagtacgtatgaaatgcaaaagtaaaagctgctaaaatttgaaatgcagttccaaccgtg |
35312208 |
T |
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| Q |
216 |
tattcagtctgcagagaagtgtgaga |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35312209 |
tattcagtctgcagagaagtgtgaga |
35312234 |
T |
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