View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_38 (Length: 255)
Name: NF20308_low_38
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 19383679 - 19383435
Alignment:
| Q |
12 |
atgaacagaat-aatttaaattcgaaactacaaacattaatttctaatgacgaaaacgacatagctaaagtataagcattaagcatagtatatatacctg |
110 |
Q |
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| T |
19383679 |
atgaacagaattaatttaaattcaaaactacaaacattaatttctaatgacaaaaacgagatagccaaagtataagcattaaccatagtatatatacctg |
19383580 |
T |
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| Q |
111 |
taaaattgaattaatacatcattagaagtgccagcattgactatgttttcccattccaaagttgaaaagtatgatgaaaagaattgaatgaattcagcaa |
210 |
Q |
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| T |
19383579 |
taaaattgaattaatacatcattagaagtgccagcattgactatgttttcccattccaaagttgaaaagtatgatgaaaagaattgaatgaattcagcaa |
19383480 |
T |
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| Q |
211 |
ctgtttcaccttgcggcatatcaaaggacacaatgtctatcccca |
255 |
Q |
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| T |
19383479 |
ctgtttcaccttgcggcatatcaaaggacacaatgtctatcccca |
19383435 |
T |
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