View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_39 (Length: 248)
Name: NF20308_low_39
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_39 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 7564951 - 7565177
Alignment:
| Q |
19 |
gaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagt |
118 |
Q |
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| T |
7564951 |
gaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagt |
7565050 |
T |
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| Q |
119 |
ctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaaaatttataggagttataatattgatagcatgcaaccac |
218 |
Q |
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| T |
7565051 |
ctggaatccttctccaaacattg---ctacctaaagtatgaaccttaacttgagttttgcaaaatttataggagttataatgttgatagcatgcaaccac |
7565147 |
T |
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| Q |
219 |
aattactttgtaattatcggtgaaactatc |
248 |
Q |
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| T |
7565148 |
aattactttgtaattatcggtgaaactatc |
7565177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 176146 - 176000
Alignment:
| Q |
28 |
ttatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctgtaatcc |
127 |
Q |
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| T |
176146 |
ttattttgatcttcaatggcccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatcc |
176047 |
T |
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| Q |
128 |
ttctccaaacattgctactacctaaagtatgaaccttaacttgagttttg |
177 |
Q |
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| T |
176046 |
ttctccaagagttg---gtgcctaaagtgtgaaccttaacttgagttttg |
176000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 1471123 - 1471281
Alignment:
| Q |
19 |
gaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagt |
118 |
Q |
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||||||||||| ||||||||| || |||||||| ||||| |||| |||||||||| | | | ||||| ||| |||| || | ||||||||||| |
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| T |
1471123 |
gaagagtcattctcttgatctagtacgacccaattaatggtaccacatacaaatttcgccatatacccttcgggttgacccatgagctgagaagggaagt |
1471222 |
T |
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| Q |
119 |
ctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaa |
180 |
Q |
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| T |
1471223 |
cttgaatcgttctccaaaaattgttac---ctaaagtatgaaccttaactagagttttgcaa |
1471281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 1459741 - 1459906
Alignment:
| Q |
19 |
gaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagt |
118 |
Q |
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||||||||||| ||| |||| ||||||||||| ||||| ||||||||||||||| || | ||| ||| ||| |||| || ||| ||||||||||| |
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| T |
1459741 |
gaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgatttgagaagggaagt |
1459840 |
T |
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| Q |
119 |
ctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaaaatttat |
187 |
Q |
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| T |
1459841 |
ctggaattgttctccaaaaatcg---ttacctaaggtactaaccttaactagagttttgcaagatttat |
1459906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 1442387 - 1442458
Alignment:
| Q |
104 |
tttcagaagggaagtctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgc |
178 |
Q |
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| T |
1442387 |
tttcagaagggaagtctgggatccttttccaaaaatt---agtacctaaagtatgaaccctaacttcagttttgc |
1442458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 55419621 - 55419475
Alignment:
| Q |
31 |
tcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctgtaatccttc |
130 |
Q |
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|||||||||| |||| |||||| ||||| |||||||||||||||||| || |||| || | |||| || |||||||||||||||||| |||||| |
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| T |
55419621 |
tcttgatcttctatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttt |
55419522 |
T |
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| Q |
131 |
tccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaa |
180 |
Q |
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| T |
55419521 |
tccaaaagttg---gtacctaaagtatgagccctaacttgagttttgcaa |
55419475 |
T |
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