View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_43 (Length: 240)
Name: NF20308_low_43
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 49904745 - 49904534
Alignment:
| Q |
19 |
accttagcataaagttgggttgcttcctaaatgcattaaaaactgcatcttcagagttcagaacaaccccaactcttcaagacatcaactttggcatccc |
118 |
Q |
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| T |
49904745 |
accttagcataaagttgggttgcttcctaaatgcattaaaaactgcatcttcaga-------acaaccccaactcttcaagacatcaactttggcatccc |
49904653 |
T |
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| Q |
119 |
attgggatttggtgacagcccttttggccaataatgctacacaaaaattgtatttggaaggttgaaaccctaattccttaatctcctctaaagccttttt |
218 |
Q |
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| T |
49904652 |
attgggatttggtgacagcccttttggccaataatgctacacaaaaattgtatttggaaggttgaaaccctaattccttaatctcctccaaagccttttt |
49904553 |
T |
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| Q |
219 |
caaatcagtacagcatatt |
237 |
Q |
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| T |
49904552 |
caaatcagtacaacatatt |
49904534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 49558529 - 49558721
Alignment:
| Q |
26 |
cataaagttgggttgcttcctaaatgcattaaaaactgcatcttcagagttcagaacaaccccaactcttcaagacatcaactttggcatcccattggga |
125 |
Q |
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| T |
49558529 |
cataaagttgggttgcttcctaaatgcattaaaaatatcatcttca-------gaacaaccccaactcttcaagacatcaaatttagcatcccactggga |
49558621 |
T |
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| Q |
126 |
tttggtgacagcccttttggccaataatgctacacaaaaattgtatttggaaggttgaaaccctaattccttaatctcctctaaagcctttttcaaatca |
225 |
Q |
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| T |
49558622 |
tttggtgacagcccttttggccaataatgctacacaaaagttgtatttggaaggttgaaaccctaattccttaatctcctccaaagcctttttcaaatca |
49558721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 49562734 - 49562865
Alignment:
| Q |
75 |
ttcagaacaaccccaactcttcaagacatcaactttggcatcccattgggatttggtgacagcccttttggccaataatgctacacaaaaattgtatttg |
174 |
Q |
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||||||| ||||||| ||||||||| |||| ||||||| ||||||||||||||| |||| ||| |||||||||| ||||| |||||||||||||| | |
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| T |
49562734 |
ttcagaataaccccagctcttcaaggcatcgactttggaatcccattgggatttagtgatggcctttttggccaacaatgcgacacaaaaattgtaacta |
49562833 |
T |
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| Q |
175 |
gaaggttgaaaccctaattccttaatctcctc |
206 |
Q |
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| T |
49562834 |
gaaggatgaaaccctaattccttaatctcctc |
49562865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 9421325 - 9421406
Alignment:
| Q |
89 |
aactcttcaagacatcaactttggcatcccattgggatttggtgacagcccttttggccaataatgctacacaaaaattgta |
170 |
Q |
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| T |
9421325 |
aactcttcaaggcatcaactttggcatcccattgggatttggtgatagcccttttgtcgggtaatgccacacaaaaattgta |
9421406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 9441370 - 9441451
Alignment:
| Q |
89 |
aactcttcaagacatcaactttggcatcccattgggatttggtgacagcccttttggccaataatgctacacaaaaattgta |
170 |
Q |
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| T |
9441370 |
aactcttcgaggcatcaactttggcgtcccattgggatttggagatagcccttttggccggtaatgccacacaaaaattgta |
9441451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 41488265 - 41488320
Alignment:
| Q |
110 |
tggcatcccattgggatttggtgacagcccttttggccaataatgctacacaaaaa |
165 |
Q |
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| T |
41488265 |
tggcatcccattgagatttggtgacagcccttttgaccactagtaccacacaaaaa |
41488320 |
T |
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