View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_44 (Length: 234)
Name: NF20308_low_44
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_44 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 95714 - 95906
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95714 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
95813 |
T |
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| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttatag |
211 |
Q |
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| T |
95814 |
tcctcgtatggactattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttatag |
95906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 87698 - 87890
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
87698 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttt |
87797 |
T |
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| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttatag |
211 |
Q |
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| T |
87798 |
tcctcgtttggactattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttatag |
87890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 40870568 - 40870376
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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| T |
40870568 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
40870469 |
T |
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| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttatag |
211 |
Q |
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| T |
40870468 |
tcctcgtatggactattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttatag |
40870376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 40878585 - 40878393
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
40878585 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttt |
40878486 |
T |
|
| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttatag |
211 |
Q |
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| T |
40878485 |
tcctcgtttggactattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttatag |
40878393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
35 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcg |
124 |
Q |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
51 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatgga |
130 |
Q |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 42730140 - 42730210
Alignment:
| Q |
36 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgc |
106 |
Q |
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| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgc |
42730210 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
35 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
89 |
Q |
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| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
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