View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_46 (Length: 216)
Name: NF20308_low_46
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 33721413 - 33721215
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721413 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtc |
33721314 |
T |
|
| Q |
101 |
tcttttcaccctgtccatactgc-nnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggac |
198 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |
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| T |
33721313 |
tcttttcaccctgtccatactgcaaaaaaaataaccatccacaaaacagatattggtggagaccaaacgtaaaatgtcagaagtgttgtcagttaggac |
33721215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 28698626 - 28698427
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28698626 |
ataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagcaatacaagtc |
28698527 |
T |
|
| Q |
101 |
tcttttcaccctgtccatactgc--nnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggac |
198 |
Q |
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|||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
28698526 |
tcttttcaccttgtccattctgcaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggtcagttaggac |
28698427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 626961 - 627162
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
626961 |
ataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagcaatataagtc |
627060 |
T |
|
| Q |
101 |
tcttttcaccctgtccatactgc----nnnnnnntaaccatccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttagg |
196 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
627061 |
tcttttcaccctatccatactgcaaaaaaaaaaataaccatccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggccagttagg |
627160 |
T |
|
| Q |
197 |
ac |
198 |
Q |
| |
|
|| |
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|
| T |
627161 |
ac |
627162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29868437 - 29868483
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
47 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
29868437 |
ataaggtctgaaggatcagtggaaggagcattacaagctaaattaaa |
29868483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19965903 - 19965949
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
47 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19965903 |
ataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
19965949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21027093 - 21027047
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
47 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21027093 |
ataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
21027047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20785912 - 20785866
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
47 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20785912 |
ataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
20785866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29470149 - 29470195
Alignment:
| Q |
1 |
ataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
47 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
29470149 |
ataaggtctgaaggttcagtggaaggagcattgcaagctaaattaaa |
29470195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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