View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_6 (Length: 611)
Name: NF20308_low_6
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 40007308 - 40007906
Alignment:
| Q |
1 |
ccatgaagataaacaaaccaggaaacctagttaatggaagcacaaaagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacaca |
100 |
Q |
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| T |
40007308 |
ccatgaagataaacaaaccaggaaacctagttaatggaagcacaaaagtactttgtgcaagaaaagtcgaaactctaaacattttgtttccagcaacaca |
40007407 |
T |
|
| Q |
101 |
tggatttccaattgttttccatgtccctaagattgtctcagctgaatgaacaagtgcttcatttggtgcccatccagtgcaacctgatgtaaccatgtaa |
200 |
Q |
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| T |
40007408 |
tggatttccaattgtttcccatgtccctaagattgtctcagctgaatgaacaagtgcttcatttggtgcccatccagtgcaacctgatgtaaccatgtaa |
40007507 |
T |
|
| Q |
201 |
tatgttcccttgtgtttgaacatagccggcgcttctcttcgctgaccgacgaaaattcttttcataacagatgtcacattgagataatcttcagtcaagg |
300 |
Q |
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| T |
40007508 |
tatgttcccttgtgtttgaacatagccggcgcttctcttcgctgaccgacgaaaattcttttcataacagatgtcacattgagataatcttcagtcaagg |
40007607 |
T |
|
| Q |
301 |
gtccaatgtgcattacattgttttcttcagatgagtatattagatatgcaacattgtcttcatctttgaaaagtgtcatgtccctgctttgatatccatg |
400 |
Q |
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| T |
40007608 |
gtccaatgtgcattacattgttttcttcagatgagtatattagatatgcaacattgtcttcatctttgaaaagtgtcatgtccctgctttgatatcgatg |
40007707 |
T |
|
| Q |
401 |
aggtctttggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggaagctttggcgtaattggcgttgtcgatatgcatc |
500 |
Q |
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| T |
40007708 |
aggtctttggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggtagctttggcgtaattggcgttgtcgatatgcatc |
40007807 |
T |
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| Q |
501 |
cacatcacatactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagatcatgtgttttatctgttttctctgct |
599 |
Q |
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| T |
40007808 |
cacatcacatactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagatcatgtgttttatctgttttctctgct |
40007906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 74 - 599
Target Start/End: Complemental strand, 5353703 - 5353178
Alignment:
| Q |
74 |
tctaaacattttgtttccagcaacacatggatttccaattgttttccatgtccctaagattgtctcagctgaatgaacaagtgcttcatttggtgcccat |
173 |
Q |
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| T |
5353703 |
tctaaacattttgtttcctcccaagcatggatttcccattgtttcccacggccccatgattgactctgctgcatgcgccagtgcctcatttggggcccac |
5353604 |
T |
|
| Q |
174 |
ccagtgcaacctgatgtaaccatgtaatatgttcccttgtgtttgaacatagccggcgcttctcttcgctgaccgacgaaaattcttttcataacagatg |
273 |
Q |
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| T |
5353603 |
cccgtgcaacccgatgtaatcatgtagtatgtaccctgatgcttgaagagagccggtgcttctcggtgttgtcccacgagaatccttctcatgacagatg |
5353504 |
T |
|
| Q |
274 |
tcacattgagataatcttcagtcaagggtccaatgtgcattacattgttttcttcagatgagtatattagatatgcaacattgtcttcatctttgaaaag |
373 |
Q |
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| T |
5353503 |
tcacattgagataatcttgggttaagggtcctatgtgcagctcactgttgtcttcggaggagtagactatatatgcaacgccatcatcgtctttgaaaac |
5353404 |
T |
|
| Q |
374 |
tgtcatgtccctgctttgatatccatgaggtctttggctcccgaggtatttgaatggaccggtaggagtatcactgaatgctatgccaacggaagctttg |
473 |
Q |
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|||||| |||||||||| |||| || || || ||||| ||||| || ||||| ||||| ||| | ||||||| ||||| |||||| || |||||| |
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| T |
5353403 |
tgtcatatccctgctttcgaatccgtgcggcctgtggctaccgagataattgaaaggaccatcaggtgcgtcactgattgctacgccaacagacgctttg |
5353304 |
T |
|
| Q |
474 |
gcgtaattggcgttgtcgatatgcatccacatcacatactttcttgttttttcattgtaaataacttttggtctctcaagcacattggacttgtgtagat |
573 |
Q |
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| T |
5353303 |
gtgtagttagcatcatcaatatgcatccacatcacatacttttcagtcttctcattgtaaatcacttttggcctctcgagcacgttagatttgtgcagat |
5353204 |
T |
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| Q |
574 |
catgtgttttatctgttttctctgct |
599 |
Q |
| |
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|||| |||| |||||||| ||||||| |
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| T |
5353203 |
catgggtttcatctgtttcctctgct |
5353178 |
T |
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