View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_7 (Length: 592)
Name: NF20308_low_7
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 2772248 - 2771694
Alignment:
| Q |
1 |
ttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaatcattgcagaaatttggtcattccacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2772248 |
ttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaatcattgcagaaatttggtcattccacat |
2772149 |
T |
|
| Q |
101 |
ttccacacaagcagcattatgaaacttgatgtgtagatgaagagcgaactgtcttgagtttggttttatatgtaagtagctggcgaaaaggtcactttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2772148 |
ttccacacaagcagcattatgaaacttgatgtgtagatgaagagtgaactgtcctgagtttggttttatatgtaagtagctggcgaaaaggtcactttga |
2772049 |
T |
|
| Q |
201 |
gctgaaaccaggcccgggatccaatttagaccaattaatgaagaaatgatggatgaaaccggttggctgagatacatacatatcctctcgattaacttca |
300 |
Q |
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| T |
2772048 |
cctgaaaccaggcgcgggatccaatttagaccaattaatgaagaaatgatgga--------------tgagatacatacatatcctctcgattaacttca |
2771963 |
T |
|
| Q |
301 |
aatcaactgggcctttatagttacagctagattgtgatagtagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattat |
400 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2771962 |
aatcaactaggcctttatagttacagctagattatgatagtagcatcaagcttggttagcaaaataaacatattcatttgaatgaagtagttttgattat |
2771863 |
T |
|
| Q |
401 |
tattattaccaccagggaccagtcttaaacaccacaaatgtcaaaagtaggaaagaaatatcaaaacgacgtctgaatggagtccagatatggatccaaa |
500 |
Q |
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| T |
2771862 |
tattattacc-------accagtcttaaacaccacaaatgtcaaaagtaggaaagaaatatcaaaacgacgtctgaatggagtccagatatggatccaaa |
2771770 |
T |
|
| Q |
501 |
ttataatacaccacaaatgacagaaatagaaaagtaaaaccaacgtgcaatccacatttttcttgattgttgcagg |
576 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2771769 |
ttataatacaccacaaatgacagaaatagaaaagtaaaaccaacgtggaatccacatttttcttgattgttgcagg |
2771694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 248 - 409
Target Start/End: Original strand, 2834837 - 2834998
Alignment:
| Q |
248 |
gatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatagtagcatc |
347 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| || |||| |||| ||||||||| ||| |||| | ||||||||| || |||||||||||| |
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| T |
2834837 |
gatggatgaaaccggttggctgagacgcatacatatcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataacgatagtagcatc |
2834936 |
T |
|
| Q |
348 |
aagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattattattac |
409 |
Q |
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| | |||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| |
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| T |
2834937 |
gatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattac |
2834998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 235 - 397
Target Start/End: Complemental strand, 2794504 - 2794342
Alignment:
| Q |
235 |
ttaatgaagaaatgatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattg |
334 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||| |||| ||| ||||||| ||||||||||||||| | ||| |||||| ||| ||||| |
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| T |
2794504 |
ttaatgaagagatgatggatgaaagcggttggctgagacacattcatgtcctctcaattaacttcaaatcattcagttatttgtagttatagcaagatta |
2794405 |
T |
|
| Q |
335 |
tgatagtagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgat |
397 |
Q |
| |
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||||||||||||||| |||||| |||||| | ||||||||||||| ||||||| |||||||| |
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|
| T |
2794404 |
tgatagtagcatcaatcttggtaagcaaagttaacatattcattcagatgaagtggttttgat |
2794342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 250 - 405
Target Start/End: Complemental strand, 2821522 - 2821357
Alignment:
| Q |
250 |
tggatgaaaccggttggctgag----atacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatag----- |
340 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||| | || | |||||||| | | |||||| |
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| T |
2821522 |
tggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagca |
2821423 |
T |
|
| Q |
341 |
-tagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattatta |
405 |
Q |
| |
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||||||||| |||| ||||| |||||||| |||||||| |||||| | |||||||||||||||| |
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| T |
2821422 |
ttagcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttgattattatta |
2821357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 2794617 - 2794531
Alignment:
| Q |
118 |
tatgaaacttgatgtgtagatgaagagcgaactgtcttgagtttggttttatatgtaagtagctggcgaaaaggtcactttgagctgaaaccaggcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||| || |||| |||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2794617 |
tatgaaacttgatgtgtagatgaagagcaaagtgtc-tgacttcggtt---------agtagctggcgaaaaggtcaatttgaactgaaaccaggcc |
2794531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2794765 - 2794706
Alignment:
| Q |
1 |
ttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaag |
60 |
Q |
| |
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|||||||||||||| ||||| |||||| | |||||||| ||||||||||||||||||| |
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| T |
2794765 |
ttcagcacctaataggtgagctgatggaccacgatcctttgaagagaatgtggtagcaag |
2794706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 488
Target Start/End: Complemental strand, 2821309 - 2821275
Alignment:
| Q |
454 |
agaaatatcaaaacgacgtctgaatggagtccaga |
488 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
2821309 |
agaaatatcaaaaagacgtctgaatggagtccaga |
2821275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 491
Target Start/End: Complemental strand, 2800537 - 2800464
Alignment:
| Q |
418 |
accagtcttaaacaccacaaatgtcaaaagtaggaaagaaatatcaaaacgacgtctgaatggagtccagatat |
491 |
Q |
| |
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|||| ||| |||||||| ||||| |||| || |||||||||| || ||| || |||||||||||||||| |||| |
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| T |
2800537 |
accaatctgaaacaccaaaaatggcaaatgttggaaagaaatgtccaaatgatgtctgaatggagtccaaatat |
2800464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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