View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20308_low_9 (Length: 571)
Name: NF20308_low_9
Description: NF20308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20308_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 174 - 555
Target Start/End: Original strand, 29552751 - 29553132
Alignment:
| Q |
174 |
aaattttgccgtattgaaagaatcagatatccggaaaaggcaggaggatgatatcagtagcgtcgcagcagttctttccataccaccagttgctgcaagc |
273 |
Q |
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||||||| || ||||||| ||||||||||||||| || |||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
29552751 |
aaatttttccatattgaacgaatcagatatccgggaacagcaggaagatgatattagtagtgtcgcggcagttctttccataccaccagttgctgcaagc |
29552850 |
T |
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| Q |
274 |
atcctacttcgtcattataattggaacgtcagtaacgttaatgaagcttggtttgctgacgaagatagagtccggagaaaagttggcttgttggagaagc |
373 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||| |
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| T |
29552851 |
atcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaaaagttggtttgttggagaagc |
29552950 |
T |
|
| Q |
374 |
cagtttatgagaatcctaatgctaaaaagcttacttgcggtatctgttttgaatattatcgtccttctaagattcacactacttcttgcggtcatcctta |
473 |
Q |
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| T |
29552951 |
cggtttgtgagaatcatgatgctaaaaagcttacttgcggcatctgttttgaagcttatcgtctttctaagattcacactgcttcttgcggtcatccgta |
29553050 |
T |
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| Q |
474 |
ctgtttttcttgctggggaggatatattggcacttcaattaacgatggtccgggatgcttgatgctgagatgtcctgatccc |
555 |
Q |
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| T |
29553051 |
ctgtttttcatgctggagaggatatattggcacctcaatcaacgatggtccgggatgcttgatgctgagatgtcctgatccc |
29553132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 174 - 555
Target Start/End: Original strand, 29537621 - 29538011
Alignment:
| Q |
174 |
aaattttgccgtattgaaagaatcagatatccggaaaaggcaggaggatgatatcagtagcgtcgcagcagttctttccataccaccagttgctgcaagc |
273 |
Q |
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||||||| || ||||||||||||||||||||||| || ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
29537621 |
aaatttttccatattgaaagaatcagatatccgggaacggcaggaagatgatatcaggagtgtcgcagcagttctttccataccacctgttgctgcaagc |
29537720 |
T |
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| Q |
274 |
atcctacttcgtcattataattggaacgtcagtaacgttaatgaagcttggtttgctgacgaagatagagtccggagaaaagttggcttgttggagaagc |
373 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
29537721 |
atcctacttcgtcattataattggaatgtcagtaatgttaatgaagcttggtttgctgatgaagacggagtccgaagaaaagttggcttgttggagaagc |
29537820 |
T |
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| Q |
374 |
cagtttatgagaatcctaatgctaa---------aaagcttacttgcggtatctgttttgaatattatcgtccttctaagattcacactacttcttgcgg |
464 |
Q |
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| T |
29537821 |
cagcttataagaatcctgatgctaacaaaatgcctaagcttacttgcggcatctgttttgaagcttatcgtccttctaagattcacactgcttcttgtgg |
29537920 |
T |
|
| Q |
465 |
tcatccttactgtttttcttgctggggaggatatattggcacttcaattaacgatggtccgggatgcttgatgctgagatgtcctgatccc |
555 |
Q |
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| T |
29537921 |
tcatccgtactgttcttcatgctggggaggatatattggcacttcaatcaacgatggtctgggatgcttgatgctgagatgtcctgatccc |
29538011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 29537465 - 29537533
Alignment:
| Q |
18 |
ggattctgatgatatgcacgatgtcaaggatgttgaatccctcgatgacgatttttactgtggtgaaac |
86 |
Q |
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| T |
29537465 |
ggattctgatgatatgcacgatgccaacgatgttgaatccctcgatgacgatttctacggtggtgaaac |
29537533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 29552601 - 29552652
Alignment:
| Q |
18 |
ggattctgatgatatgcacgatgtcaaggatgttgaatccctcgatgacgat |
69 |
Q |
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| T |
29552601 |
ggattctgatgatatgcactattccaacgatgttgaatccctccatgacgat |
29552652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 42188468 - 42188591
Alignment:
| Q |
174 |
aaattttgccgtattgaaagaatcagatatccggaaaaggcaggaggatgatatcagtagcgtcgcagcagttctttccataccaccagttgctgcaagc |
273 |
Q |
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|||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
42188468 |
aaattttgccatattgaaagaatcagatatccgggatcggcaggaagatgatatcagtagtgtcgcaacagttctttccataccaccagttgctgcaagc |
42188567 |
T |
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| Q |
274 |
atcctacttcgtcattataattgg |
297 |
Q |
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||||||||||||||||| |||||| |
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| T |
42188568 |
atcctacttcgtcattacaattgg |
42188591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 296 - 395
Target Start/End: Original strand, 42188734 - 42188833
Alignment:
| Q |
296 |
ggaacgtcagtaacgttaatgaagcttggtttgctgacgaagatagagtccggagaaaagttggcttgttggagaagccagtttatgagaatcctaatgc |
395 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
42188734 |
ggaatgtcagtaatgttaatgatgcttggtttgctgacgaagacagagtccgaagaaaagttggcttgttggagaagccagtttacgagaatcctgatgc |
42188833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 42188960 - 42189053
Alignment:
| Q |
401 |
agcttacttgcggtatctgttttgaatattatcgtccttctaagattcacactacttcttgcggtcatccttactgtttttcttgctggggagg |
494 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
42188960 |
agcttacttgcggcatctgttttgaagcttatcgtccttctaagattcacaatgcttcttgcggccatccgtactgtttttcatgctggggagg |
42189053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 42189222 - 42189284
Alignment:
| Q |
492 |
aggatatattggcacttcaattaacgatggtccgggatgcttgatgctgagatgtcctgatcc |
554 |
Q |
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| T |
42189222 |
aggatatattggcacttcaattaacgatggtcctggatgcttgatgctgagatgtcctgatcc |
42189284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 42187674 - 42187742
Alignment:
| Q |
18 |
ggattctgatgatatgcacgatgtcaaggatgttgaatccctcgatgacgatttttactgtggtgaaac |
86 |
Q |
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| T |
42187674 |
ggattctgatgatatgcatgatgccaacgatgttgaatccctcgatgacgatttctacagtggtgaaac |
42187742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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