View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20309_high_2 (Length: 472)
Name: NF20309_high_2
Description: NF20309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20309_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 43561520 - 43561965
Alignment:
| Q |
17 |
caatcaacataaactcacttctcacctcaaccgagttataactctcttctatattaggaagctcaacaatctcactaagctctgaagactctgatgaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43561520 |
caatcaacataaactcacttctcacctcaaccgagttataactctcttctatattaggaagctcaacaatctcactaagctctgtagactctgatgaata |
43561619 |
T |
|
| Q |
117 |
tgaaggtgagtcagagacttcagagctgagtgagattgttgagcgcaatatttgagaatcaaattccaccatggcagcagcttctgcagctgcaacttga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561620 |
tgaaggtgagtcagagacttcagagctgagtgagattgttgagcgcaatatttgagaatcaaattccaccatggcagcagcttctgcagctgcaacttga |
43561719 |
T |
|
| Q |
217 |
atgtcacgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagttcagaattgctgaatgaccctttatactcaaagcagcaacat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561720 |
atgtcacgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagttaagaattgctgaatgaccctttatactcaaagcagcaacat |
43561819 |
T |
|
| Q |
317 |
catgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43561820 |
catgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttccgatacccattttccccagct |
43561919 |
T |
|
| Q |
417 |
tcgcattcgaacgccgtgataaaccgggtggctgttgcagtctctg |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561920 |
tcgcattcgaacgccgtgataaaccgggtggctgttgcagtctctg |
43561965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 36077744 - 36077810
Alignment:
| Q |
308 |
cagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattt |
374 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| || |||| ||||||||| ||||| |||| |||||| |
|
|
| T |
36077744 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgattt |
36077810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 4268763 - 4268648
Alignment:
| Q |
304 |
aaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgataccc |
403 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| || || | | | ||||| |||||||||| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
4268763 |
aaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagataccc |
4268664 |
T |
|
| Q |
404 |
attttccccagcttcg |
419 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
4268663 |
attttccccagtttcg |
4268648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 377
Target Start/End: Original strand, 505520 - 505615
Alignment:
| Q |
282 |
tgctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgatttttt |
377 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||||||||| |
|
|
| T |
505520 |
tgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgatttttt |
505615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 413
Target Start/End: Original strand, 16357796 - 16357926
Alignment:
| Q |
283 |
gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgag |
382 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||| || || | | |
|
|
| T |
16357796 |
gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttg |
16357895 |
T |
|
| Q |
383 |
gttcgcggatttctgatacccattttcccca |
413 |
Q |
| |
|
| || || ||||| ||||||||||||||||| |
|
|
| T |
16357896 |
gctcacgaatttcagatacccattttcccca |
16357926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 33589286 - 33589193
Alignment:
| Q |
331 |
gccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
424 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||| ||| || || ||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
33589286 |
gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattc |
33589193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 424
Target Start/End: Complemental strand, 33602408 - 33602312
Alignment:
| Q |
328 |
gctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
424 |
Q |
| |
|
||||||||||||| || ||| | ||||| ||||||||||| ||| || || ||||| |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
33602408 |
gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattc |
33602312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 413
Target Start/End: Complemental strand, 71116 - 71010
Alignment:
| Q |
307 |
gcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccatt |
406 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||| ||| | | |||| || ||||| || || ||||| || || || ||||||||||| || ||||| | |
|
|
| T |
71116 |
gcagcagcgtcatgcgctctagcagccatttcagcagtggggaaagtgcctagccaaatccgcgatttcttacgtggctcgcggatttcggacacccact |
71017 |
T |
|
| Q |
407 |
ttcccca |
413 |
Q |
| |
|
||||||| |
|
|
| T |
71016 |
ttcccca |
71010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University